Primer, probe, kit and method for detection of human ALDH2 gene polymorphism
A gene polymorphism and kit technology, applied in the field of genetic engineering, can solve the problems of inability to accurately locate gene changes, expensive chips, inability to accurately detect gene polymorphisms in samples, etc., and achieve intuitive and convenient result interpretation and fluorescence analysis. Accurate analysis and the effect of reducing background signal strength
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Embodiment 1
[0040] Example 1: Using cell line DNA samples containing polymorphic sites of ALDH2 genes to verify the specificity of the detection system of the present invention
[0041] In this example, the feasibility and specificity of the detection method of the present invention are verified by determining the ALDH2-GG type H2228 cell line, the ALDH2-AA type Kasumi cell line, and the ALDH2-GA type Kasumi and H2228 heterozygous cell line through sequencing.
[0042] The specific detection method is as follows:
[0043] Using the PCR reaction system and reaction conditions described in this manual, using Kasumi DNA, H2228 DNA, and the mixed DNA of Kasumi and H2228 as templates, each DNA sample was spotted once for detection.
[0044] The genotyping results of the test are shown in the attached instructions figure 1 shown. Among them, NTC is the negative control, the H2228 DNA sample well is ALDH2-GG type, the Kasumi DNA sample well is ALDH2-AA type, and the mixed DNA sample well of Kas...
Embodiment 2
[0046] Example 2: Using human genomic DNA samples to detect ALDH2 gene polymorphisms to verify the repeatability of the detection system of the present invention
[0047] In this example, human genomic DNA samples were used as templates for fluorescent PCR genotyping detection, and the detection results were directly compared with the "gold standard" sequencing results to verify the repeatability and accuracy of the detection system of the present invention.
[0048] The specific detection method is as follows:
[0049] Using the PCR reaction system and reaction conditions described in this manual, the human genome DNA sample is used as a template for fluorescent PCR genotyping detection.
[0050] The genotyping results of 78 representative human genomic DNA samples are shown in the attached instructions Figure 2A As shown, where NTC is the negative control, except for the positive control, 47 samples are ALDH2-GG homozygous, 28 samples are ALDH2-GA heterozygous, and 3 sampl...
Embodiment 3
[0052] Example 3: Using Human Genomic DNA Samples to Detect ALDH2 Gene Polymorphisms to Verify the Sensitivity of the Detection System of the Present Invention
[0053] In this embodiment, the sensitivity of the detection system of the present invention is also verified by using the human genome DNA sample as a template.
[0054] The specific detection method is as follows:
[0055] Using the PCR reaction system and reaction conditions described in this manual, select 7 cases of human genomic DNA samples as templates for fluorescent PCR genotyping detection, and set the detection limit groups of each DNA template as follows: 0.05ng; 0.1ng; 0.5ng ;1ng;10ng;50ng;100ng. The results show that clear genotyping results can still be obtained under the condition that the amount of DNA template is only 1ng. The representative genotyping results are shown in the attached instructions. image 3 As shown, NTC is the negative control. In addition to the positive control, 5 samples are AL...
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