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Primer group and application of primer group in rapid detection of leptosphaeria lindquistii Frezzi based on micro-fluidic chip

A technology of microfluidic chip and primer set, which is applied in the direction of microorganism-based methods, microorganism measurement/testing, microorganisms, etc., can solve the problems of expensive hardware platform, time-consuming and labor-intensive digestion of multiple enzymes, cross-contamination, etc., to avoid Effects of aerosol pollution, accelerated detection speed, and improved work efficiency

Pending Publication Date: 2020-09-15
NINGBO ACAD OF SCI & TECH FOR INSPECTION & QUARANTINE
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

Among them, the biological identification method is labor-intensive and time-consuming, and it is difficult to distinguish the sunflower black stem fungus from other Phomomycetes morphologically, so the identification is difficult
However, the hardware platform required for preliminary screening of samples by PCR method is relatively expensive, and it is not easy for grassroots testing institutions to popularize
At the same time, due to the low sensitivity of PCR with specific primers, DNA samples with lower content cannot be detected, and the detection accuracy cannot be met.
In addition, if gene sequence analysis is used, although the amount of biological information obtained is large, sequencing is required, and the detection cycle is long
Although RFLP labeling technology does not require sequencing, multiple enzyme digestions are also time-consuming and labor-intensive.
In addition, the above molecular detection methods must be subjected to electrophoresis, and the experimenters also need to be exposed to toxic reagents, and cross-contamination is prone to occur, resulting in false positive results

Method used

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  • Primer group and application of primer group in rapid detection of leptosphaeria lindquistii Frezzi based on micro-fluidic chip
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  • Primer group and application of primer group in rapid detection of leptosphaeria lindquistii Frezzi based on micro-fluidic chip

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0062] Embodiment 1: sunflower black stem fungus positive sample test experiment

[0063] The DNA of the positive sample of sunflower black stem fungus (P40~P43 is the DNA of sunflower black stem fungus) was added as template nucleic acid into each sample well of the microfluidic chip, and amplified according to the above amplification method. Wherein, the negative control in this embodiment is double distilled water, and the corresponding order of microfluidic chip holes is as follows: Picture 1-1 As shown, the amplification result is as Figure 1-2 As shown, the amplification curve is as figure 1 shown.

Embodiment 2

[0064] Embodiment 2: Sensitivity experiment

[0065] Plasmids of different concentrations were added as templates into the sample wells of the chip, and amplified according to the above-mentioned amplification method, wherein the negative control in this example was double distilled water, and the corresponding order of the chip wells was as follows: Figure 1-3 shown (Note: Figure 1-3 The concentration of the plasmid in the unit is copies / μL), and the amplification result is as follows Figure 1-4 As shown, the amplification curves of each concentration of plasmids are as follows Figure 2-8 shown. Among them, the above-mentioned plasmid is the puc57 plasmid (produced by Ningbo Ai Gene Technology Co., Ltd.). After the puc57 plasmid is digested by enzymes, it is spliced ​​with the above-mentioned target gene fragments, and the plasmids that are successfully connected are screened for experiments. The specific methods are conventional plasmid splicing. technology.

[0066]...

Embodiment 3

[0067] Embodiment 3: repeatability experiment

[0068] Add the 104copies / μL plasmid in the above-mentioned Example 2 as a template into each sample well of the chip, and other experimental conditions are the same as in Example 2, and the corresponding order of the chip holes is as follows: Figure 1-5 As shown, the amplification result is as Figure 1-5 As shown, the amplification curve of each replicate sample is as follows Figure 9 shown.

[0069] It can be seen from the experimental results of the examples that the CV value of the primer set in the present invention is equal to 3.56% (less than 5%), that is, the repeatability is good.

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Abstract

The invention relates to a primer group and application of the primer group in rapid detection of leptosphaeria lindquistii Frezzi based on a micro-fluidic chip. The primer group is composed of the following primers: LI-F3-4, LI-B3-2 / 3 / 4, LI-FIP-4, LI-BIP-4, LI-LF-4 and LI-LB-4. The primer group disclosed by the invention is strong in amplification specificity and high in sensitivity, and the lowest detection limit can reach 101 copies / [mu]L. The detection method disclosed by the invention is high in detection speed, and can be used to simultaneously detect a variety of pathogens. The peak initiation time is 7-12 min, and the whole process consumes 0.5 h, so that the detection speed is substantially accelerated, and work efficiency is improved. Moreover, sensitivity is high, and the reaction system is small, so that cost is saved, no expensive instrument is required, operation is simple, and the primer group is suitable for rapid screening at ports and other non-laboratory places.

Description

technical field [0001] The invention relates to the detection technology of plant pathogenic fungi, in particular to a primer set and its application in rapid detection of sunflower black stem fungus based on a microfluidic chip. Background technique [0002] The sunflower black stem fungus is a devastating disease that sunflowers are very susceptible to during the growth process. In 2010, the pathogen was included in the "List of Imported Plant Quarantine Pests of the People's Republic of China", and it is my country's imported plant quarantine pests. [0003] At present, sunflower black stem disease is mostly distributed in countries and regions such as Canada, the former Yugoslavia, France, Argentina, Hungary, Romania, Australia, Iran, Pakistan and the United States. In 2008, it was first reported that the disease occurred in Xinjiang, and then it also occurred in Jilin, Inner Mongolia, and Hebei. In the early stage of sunflower black stem disease, black spots appear at...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/6895C12Q1/04C12Q1/6837C12Q1/6844C12N15/11C12R1/645
CPCC12Q1/6895C12Q1/6837C12Q1/6844C12Q2531/119
Inventor 段维军李雪莲张慧丽王佳莹郭立新陈先锋
Owner NINGBO ACAD OF SCI & TECH FOR INSPECTION & QUARANTINE
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