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Gene chip for detecting various prawn pathogenes and detection method thereof

A technology of gene chips and pathogens, which is applied in the field of gene chips and detection of various pathogens of prawns, and can solve the problems of high-throughput detection, poor accuracy, and low sensitivity

Inactive Publication Date: 2011-01-12
YELLOW SEA FISHERIES RES INST CHINESE ACAD OF FISHERIES SCI
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0004] The purpose of the present invention is to provide a gene chip and detection method for detecting various prawn pathogens, for detecting white spot syndrome virus, infectious subcutaneous and hematopoietic organ necrosis virus, hepatopancreatic parvovirus, Penaeus monodon baculovirus, Taura virus, Yellow head virus, Shrimp baculovirus, Spawning shrimp death virus, Infectious myonecrosis virus, LSNV, Maori virus, Shrimp nodavirus, NHP, Fusarium, Ichthyophthora, Proteus A total of 18 types of pathogens of prawns including Bacillus, Pseudomonas and Rickettsia prawns, to solve the problems of high-throughput detection, low sensitivity and poor accuracy of existing technologies

Method used

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  • Gene chip for detecting various prawn pathogenes and detection method thereof
  • Gene chip for detecting various prawn pathogenes and detection method thereof
  • Gene chip for detecting various prawn pathogenes and detection method thereof

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0062] Embodiment 1: the construction of gene chip

[0063] 1. Probe selection on the gene chip

[0064] (1) Determination of characteristic genes

[0065] For the quality control system and the common pathogenic microorganisms of prawns, the characteristic genes to be detected were determined by consulting relevant literature.

[0066] The quality control system is divided into 5 parts, namely surface chemical quality control, hybridization positive external control quality control, positive internal control quality control of the whole process monitoring, negative quality control and blank quality control. Among them, the surface chemical quality control uses the bovine β-actin gene as a characteristic gene, which is used to reflect whether there is a problem with the fixation of the nucleic acid on the film substrate; the hybrid positive external control quality control uses the bovine β-globin gene as a characteristic gene, and uses To monitor the hybridization step; the...

Embodiment 2

[0083] Example 2: Validation of the effect of the gene chip

[0084] 1. Validation of the effect of each quality control in the quality control system

[0085] The steps of using the above-mentioned gene chip detection method: (1) preparation of the sample to be tested, (2) digoxin-labeled PCR product, (3) pre-hybridization and hybridization, (4) adding alkaline phosphatase-labeled digoxin antibody, (5) Color development, (6) Interpretation of results; using the total gill DNA and calf thymus DNA of five shrimp species, Litopenaeus vannamei, Penaeus monodon, Penaeus chinensis, Penaeus japonicus, and Penaeum meji, as templates, for the detection of shrimp The surface chemical quality control QC1 of the gene chip of various pathogens, the hybridization positive external control quality control QC2, the internal control quality control QC3 of the whole process monitoring, and the primers and corresponding probes of the negative control quality control QC4 are verified.

[0086] ...

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Abstract

The invention relates to a gene chip for detecting various prawn pathogenes and a detection method thereof. The gene chip is prepared by arranging the probes of a quality control system and the probe points of 18 types of prawn pathogenes on the same solid-phase carrier nylon membrane. The probes of 18 types of the prawn pathogenes comprise probes for detecting 15 types of viruses, probes for detecting fusarium, fish-killing aphanomyces and deformation algal filament cristatum, and probes for detecting Paranophrys and prawn rickettsia. When the gene chip is used for detection, a signal is judged according to the condition whether blue or royal purple appears at a hybridization point by using a digoxin hybridization chromogenic method. The construction of the quality control system on the gene chip ensures the detection specificity and sensitivity, thus, the gene chip can be used for simultaneously detecting various prawn pathogenic microorganisms on the same nylon membrane, has the characteristic of high flux, can replace the prior related detection method for the prawn pathogenic microorganisms, and is a breakthrough of the prior prawn pathogenic microorganism judging technique.

Description

technical field [0001] The invention belongs to the technical field of pathogen detection of marine organisms using a gene chip, and in particular relates to a gene chip for detecting various prawn pathogens and a detection method thereof. Background technique [0002] In recent years, the use of nucleic acid technology to detect pathogenic microorganisms in marine animals has developed very rapidly. Combined with immunology technology, restriction enzyme technology and loop-mediated isothermal amplification and other methods. However, due to the variety of farmed animals and the variety of pathogens, the detection and diagnosis of a single pathogen cannot fully reflect the cause and status of the disease, which is not conducive to determining effective control measures. Existing pathogen detection techniques have large limitations, low efficiency, and poor systematization. Therefore, there is an urgent need for breakthroughs in high-throughput analysis capabilities in mari...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/70C12Q1/68C12Q1/04C12N15/11
Inventor 黄倢荆晓艳杨冰张庆利闫丽王秀华张宝存宋晓玲史成银刘莉
Owner YELLOW SEA FISHERIES RES INST CHINESE ACAD OF FISHERIES SCI
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