Looking for breakthrough ideas for innovation challenges? Try Patsnap Eureka!

Bcr-Abl gene mutation detection liquid-phase chip

A bcr-abl, detection liquid technology, applied in the field of molecular biology, can solve the problems of high false positive rate, low sensitivity, easy contamination of samples, etc., and achieve the effects of simple steps, improved sensitivity, and strong scalability.

Active Publication Date: 2011-03-09
SUREXAM BIO TECH
View PDF2 Cites 18 Cited by
  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0004] At present, the detection products of Bcr-Abl are generally based on PCR technology, such as fluorescent quantitative PCR method, FRET method and DNA sequencing method, which have the disadvantages of easy sample contamination, high false positive rate, and low sensitivity. At the same time, due to the limitation of detection throughput , cannot meet the needs of practical applications

Method used

the structure of the environmentally friendly knitted fabric provided by the present invention; figure 2 Flow chart of the yarn wrapping machine for environmentally friendly knitted fabrics and storage devices; image 3 Is the parameter map of the yarn covering machine
View more

Image

Smart Image Click on the blue labels to locate them in the text.
Viewing Examples
Smart Image
  • Bcr-Abl gene mutation detection liquid-phase chip
  • Bcr-Abl gene mutation detection liquid-phase chip
  • Bcr-Abl gene mutation detection liquid-phase chip

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1B

[0022] Embodiment 1 Bcr-Abl gene mutation detection liquid chip mainly includes:

[0023] 1. ASPE Primers

[0024] Specific primer sequences were designed for 16 common mutation sites of Bcr-Abl gene M244V, L248V, D276G, G250E, Y253F / H, E255K / V, T315I, F317L, E355G, F359V, V379I, H396P / R, F486S . ASPE primers consist of "Tag sequence + specific primer sequence". ASPE primer sequences are shown in the table below:

[0025] Table 1 ASPE primer sequence (Tag sequence + specific primer sequence)

[0026]

[0027]

[0028]

[0029] Each ASPE primer includes two parts, the 5' end is a specific tag sequence for the anti-tag sequence on the corresponding microsphere, and the 3' end is a mutant or wild-type specific primer fragment (as shown in the above table 1). All ASPE primers were synthesized by Shanghai Sangon Bioengineering Technology Service Co., Ltd. Each synthesized primer was prepared into a 100pmol / mL stock solution with 10mmol / LTris Buffer.

[0030] 2. Micro...

Embodiment 3

[0102] The detection of the Bcr-Abl gene mutation site by the liquid chip of embodiment 3 different ASPE primers

[0103] 1. Design of liquid phase chip preparation (selection of Tag sequence and Anti-Tag sequence)

[0104] Taking the Bcr-Abl gene M244V site mutation detection liquid chip as an example, the specific primer sequence of the 3' end of the ASPE primer was designed for the wild type and mutant type of M244, and the Tag sequence at the 5' end of the ASPE primer was selected from SEQ ID NO .1-SEQ ID NO.31, correspondingly, the anti-tag sequence coated on the microsphere and complementary to the corresponding tag sequence is selected from SEQ ID NO.63-SEQ ID NO.93. The specific design is shown in the following table (Table 7). The synthesis of ASPE primers, microspheres coated with anti-tag sequences, amplification primers, detection methods, etc. are as described in Example 1 and Example 2.

[0105] Table 7 Design of liquid phase chip preparation

[0106]

[01...

the structure of the environmentally friendly knitted fabric provided by the present invention; figure 2 Flow chart of the yarn wrapping machine for environmentally friendly knitted fabrics and storage devices; image 3 Is the parameter map of the yarn covering machine
Login to View More

PUM

No PUM Login to View More

Abstract

The invention discloses a Bcr-Abl gene mutation detection liquid-phase chip, which comprises a wild-type specific ASPE primer and a mutant specific ASPE primer respectively designed for each mutational site, microballoons respectively covered with a specific anti-tag sequence and primers used for amplifying a target sequence carrying mutational sites of M244V, L248V, D276G, G250E, Y253F / H, E255K / V, T315I, F317L, E355G, F359V, V379I, H396P / R and / or F486S on Bcr-Abl gene. The Bcr-Abl gene mutation detection liquid-phase chip has extreme good signal-noise ratio, and cross reaction is basically unavailable between a designed probe and the anti-tag sequence. The designed ASPE primer has extreme good specificity and can exactly distinguish the each type of mutational sites. The detecting methodis convenient in operation and can detect 16 types of mutational sites at one time while avoiding various uncertain factors existed in many operation processes, thereby being capable of greatly heightening the detecting accuracy rate.

Description

technical field [0001] The invention belongs to the field of molecular biology, relates to medicine and biotechnology, in particular to a Bcr-Abl gene mutation detection liquid phase chip. Background technique [0002] The Bcr-Abl fusion gene is a fusion gene formed by translocation between the Abl proto-oncogene on chromosome 9 and the Bcr gene on chromosome 22 in human cells. This gene produces a new mRNA, the encoded protein is P210, and P210 can cause continuous activation of protein kinase, causing excessive proliferation of white blood cells and chronic myeloid leukemia (CML). Tyrosine kinase plays a key role in the occurrence of CML, and inhibiting its active components has become a new approach for CML treatment. The first-line drug imatinib for the treatment of CML is a specific Abl tyrosine kinase inhibitor, which can selectively bind to the Bcr-Abl receptor, preventing the transfer of phosphate groups from adenosine triphosphate to protein substrates, making it ...

Claims

the structure of the environmentally friendly knitted fabric provided by the present invention; figure 2 Flow chart of the yarn wrapping machine for environmentally friendly knitted fabrics and storage devices; image 3 Is the parameter map of the yarn covering machine
Login to View More

Application Information

Patent Timeline
no application Login to View More
IPC IPC(8): C12Q1/68
Inventor 许嘉森余刚
Owner SUREXAM BIO TECH
Who we serve
  • R&D Engineer
  • R&D Manager
  • IP Professional
Why Patsnap Eureka
  • Industry Leading Data Capabilities
  • Powerful AI technology
  • Patent DNA Extraction
Social media
Patsnap Eureka Blog
Learn More
PatSnap group products