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Real-time fluorescence RT-HDA (Reverse Transcriptase-Helicase-Dependent Isothermal Amplification) kit and primer for detecting avian influenza virus

An avian influenza virus and real-time fluorescence technology, which is applied in the field of inspection and quarantine, can solve the problems of high cost of fluorescent PCR instrument and easy to be affected by various factors, and achieve the effect of simple program setting, easy to master and operate, and fast response.

Active Publication Date: 2013-11-13
PEOPLES REPUBLIC OF CHINA BEIJING ENTRY EXIT INSPECTION & QUARANTINE BUREAU
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

However, there are still some shortcomings in the traditional PCR technology: expensive equipment is needed, especially the fluorescent PCR instrument is expensive; it is easily affected by many factors; the amplification time often takes several hours
At present, international research on real-time fluorescent HDA technology is still in its infancy, and there is no research on real-time fluorescent HDA detection of animal viruses at home and abroad.

Method used

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  • Real-time fluorescence RT-HDA (Reverse Transcriptase-Helicase-Dependent Isothermal Amplification) kit and primer for detecting avian influenza virus
  • Real-time fluorescence RT-HDA (Reverse Transcriptase-Helicase-Dependent Isothermal Amplification) kit and primer for detecting avian influenza virus
  • Real-time fluorescence RT-HDA (Reverse Transcriptase-Helicase-Dependent Isothermal Amplification) kit and primer for detecting avian influenza virus

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0053] Example 1: Design and synthesis of HDA primers

[0054] According to the gene sequence of avian influenza virus registered in Genbank, DNAMAN software was used for comparative analysis, and the highly conserved region of AIV-M gene was selected, and the online software Primer3 (http: / / frodo.wi.mit.edu / ) was used for primer design , and combined with Oligo6.0 software to analyze and evaluate the primers, and design general primers for avian influenza virus. Primer sequences are the same as Table 1. Primers were synthesized by Shanghai Yingjun Biotechnology Co., Ltd.

Embodiment 2

[0055] Embodiment 2: the extraction of avian influenza virus RNA

[0056] Avian influenza virus RNA was extracted using RNA extraction reagents.

[0057] The specific operation is as follows:

[0058] ①Take n 1.5mL sterilized Eppendorf tubes, where n is the sum of the number of samples to be tested, one tube of positive control and one tube of negative control, and mark each tube with a number.

[0059] ② Add 600 μL TRIZOL lysate to each tube, then add 200 μL each of the sample to be tested, negative control and positive control, and use a tip for each sample; then add 200 μL of chloroform, shake and mix for 5 seconds on a mixer. Centrifuge at 12000r / min for 15min at 4°C.

[0060] ③ Take the same number of 1.5mL sterilized Eppendorf tubes as in ①, add 500 μL of isopropanol (pre-cooled at -20°C), and number each tube. 5.3.2 After centrifugation, transfer the supernatant in each tube to the corresponding tube, absorb at least 500 μL of the supernatant, be careful not to suck ...

Embodiment 3

[0065] Example 3: Establishment of real-time fluorescent RT-HDA

[0066] 1. Concentration of primers, MgSO 4 The concentration and NaCl concentration were optimized respectively, and the reaction system of real-time fluorescent RT-HDA was established.

[0067] Obtain bird flu virus RNA according to embodiment 2 method, template concentration is about 10 4 copy / microliter, perform real-time fluorescent RT-HDA, and optimize the reaction system. The optimized range of each component is shown in Table 2, the reaction system is shown in Table 3, and the sequences of the primers and probes used are shown in Table 1.

[0068] The optimized range of each component in the reaction system of table 2AIV RT-HDA

[0069] ingredient name

concentration range

increment interval

Primer I and Primer II (both 5 μM)

50~200nM

25nM

MgSO 4 (100mM)

3.0~4.5mM

0.5mM

NaCl (500mM)

20~50mM

5mM

[0070] The optimization of table 3AI...

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Abstract

The invention discloses a real-time fluorescence RT-HDA (Reverse Transcriptase-Helicase-Dependent Isothermal Amplification) kit and a primer for detecting avian influenza virus. A group of primers for detecting the avian influenza virus have an oligonucleotides sequence shown by a sequence table SEQ ID No:1 and a sequence table SEQ ID No:2. The kit and the primer have the following advantages that the novel HDA technology is applied to the detection of the avian influenza virus, and compared with the existing AIV (Avian Influenza Virus) detecting method, the HDA detecting method has the advantages of fastness, more convenience, safety and reliability; for the conventional virus separation and serology method, long time is consumed, the bio-safety risk exists; for the HDA method, a natural reproduction mechanism in a body is simulated, the safety is high, the reaction speed is quick, and the detection can be completed by only 2h at most; and compared with fluorescence PCR (Polymerase Chain Reaction), the HDA detecting method has the advantages that the program setting is easier, the reaction conditions such as annealing temperature and the like do not need to be explored, and the HDA detecting method is easier to master and operate in the aspect of technical level. Due to the optimization of reaction conditions, according to the real-time fluorescence RT-HDA method, at least 10copies / reaction of viral nucleic acid can be detected. The technology has a great application prospect in the monitoring and diagnosis of the avian influenza virus, and the kit and the primer are diagnosis tools with good promotion and application values.

Description

technical field [0001] The invention relates to a real-time fluorescent RT-HDA kit and primers for detecting avian influenza virus, belonging to the field of inspection and quarantine. Background technique [0002] Avian Influenza (AI) is an infection and / or disease syndrome in poultry caused by Orthomyxoviridae, Influenzavirus, and Influenza A viruses. Avian influenza has a long history. It was first discovered in 1878. Perroncito first reported the occurrence of avian influenza in Italy. It has been listed as a severe infectious disease by the International Veterinary Office (OIE). As one of the most important diseases with potential threats, my country has also listed highly pathogenic avian influenza (HPAI) as a first-class animal infectious disease for prevention and control. In recent years, there have been avian influenza epidemics in many areas of my country, which have brought different degrees of blows to the poultry industry. So far, there have been many fatal inc...

Claims

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Application Information

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Patent Type & Authority Patents(China)
IPC IPC(8): C12Q1/70C12Q1/68C12N15/11C12R1/93
Inventor 蒲静刘环乔彩霞高志强汪琳张伟谷强
Owner PEOPLES REPUBLIC OF CHINA BEIJING ENTRY EXIT INSPECTION & QUARANTINE BUREAU
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