Real-time fluorescence RT-HDA (Reverse Transcriptase-Helicase-Dependent Isothermal Amplification) kit and primer for detecting avian influenza virus
An avian influenza virus and real-time fluorescence technology, which is applied in the field of inspection and quarantine, can solve the problems of high cost of fluorescent PCR instrument and easy to be affected by various factors, and achieve the effect of simple program setting, easy to master and operate, and fast response.
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Embodiment 1
[0053] Example 1: Design and synthesis of HDA primers
[0054] According to the gene sequence of avian influenza virus registered in Genbank, DNAMAN software was used for comparative analysis, and the highly conserved region of AIV-M gene was selected, and the online software Primer3 (http: / / frodo.wi.mit.edu / ) was used for primer design , and combined with Oligo6.0 software to analyze and evaluate the primers, and design general primers for avian influenza virus. Primer sequences are the same as Table 1. Primers were synthesized by Shanghai Yingjun Biotechnology Co., Ltd.
Embodiment 2
[0055] Embodiment 2: the extraction of avian influenza virus RNA
[0056] Avian influenza virus RNA was extracted using RNA extraction reagents.
[0057] The specific operation is as follows:
[0058] ①Take n 1.5mL sterilized Eppendorf tubes, where n is the sum of the number of samples to be tested, one tube of positive control and one tube of negative control, and mark each tube with a number.
[0059] ② Add 600 μL TRIZOL lysate to each tube, then add 200 μL each of the sample to be tested, negative control and positive control, and use a tip for each sample; then add 200 μL of chloroform, shake and mix for 5 seconds on a mixer. Centrifuge at 12000r / min for 15min at 4°C.
[0060] ③ Take the same number of 1.5mL sterilized Eppendorf tubes as in ①, add 500 μL of isopropanol (pre-cooled at -20°C), and number each tube. 5.3.2 After centrifugation, transfer the supernatant in each tube to the corresponding tube, absorb at least 500 μL of the supernatant, be careful not to suck ...
Embodiment 3
[0065] Example 3: Establishment of real-time fluorescent RT-HDA
[0066] 1. Concentration of primers, MgSO 4 The concentration and NaCl concentration were optimized respectively, and the reaction system of real-time fluorescent RT-HDA was established.
[0067] Obtain bird flu virus RNA according to embodiment 2 method, template concentration is about 10 4 copy / microliter, perform real-time fluorescent RT-HDA, and optimize the reaction system. The optimized range of each component is shown in Table 2, the reaction system is shown in Table 3, and the sequences of the primers and probes used are shown in Table 1.
[0068] The optimized range of each component in the reaction system of table 2AIV RT-HDA
[0069] ingredient name
concentration range
increment interval
Primer I and Primer II (both 5 μM)
50~200nM
25nM
MgSO 4 (100mM)
3.0~4.5mM
0.5mM
NaCl (500mM)
20~50mM
5mM
[0070] The optimization of table 3AI...
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