HRAS gene mutation detection specificity primer and liquid chip thereof
A detection solution and specificity technology, which is applied in the field of molecular biology, can solve problems such as unusable and unsatisfactory for practical applications, achieve consistent detection results, improve detection accuracy, and avoid uncertain factors
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Embodiment 1
[0024] The HRAS gene mutation detection liquid chip described in this embodiment mainly includes:
[0025] 1. ASPE Primers
[0026] For the normal genotype and five mutant types of HRAS gene Codon 12: G12S, G12C, G12R, G12D, G12V, the normal genotype and three mutant types of Codon 13: G13S, G13R, G13C, and the normal genotype of Codon 61 And four mutant types: Q61K, Q61R, Q61L, Q61H, respectively design specific primer sequences. ASPE primers consist of "tag sequence + specific primer sequence". ASPE primer sequences are shown in the table below:
[0027] Table 1 ASPE primer sequence of HRAS gene (tag sequence + specific primer sequence)
[0028]
[0029]
[0030] Each ASPE primer includes two parts, the 5' end is a specific tag sequence for the anti-tag sequence on the corresponding microsphere, and the 3' end is a mutant or wild-type specific primer fragment (as shown in the above table 1). All ASPE primers were synthesized by Shanghai Sangon Bioengineering Techno...
Embodiment 2
[0043] Example 2 Using the HRAS gene mutation detection liquid chip described in Example 1 to detect samples
[0044] The formula of described various solutions is as follows:
[0045] 50mM MES buffer (pH5.0) formula (250ml):
[0046]
[0047] 2×Tm hybridization buffer
[0048] Reagent
[0049] Store at 4°C after filtration.
[0050] ExoSAP-IT kit was purchased from US USB Company.
[0051] Biotin-labeled dCTP was purchased from Shanghai Sangon Bioengineering Technology Service Co., Ltd.
[0052] 1. Sample DNA extraction:
[0053] Refer to the relevant methods of DNA extraction in "Molecular Cloning" to obtain the DNA to be detected.
[0054] 2. PCR amplification of samples to be tested
[0055] Two pairs of primers were designed, and two target sequences of 12 common genotypes containing HRAS genes Codon12, Codon13, and Codon61 were amplified in one step by multiplex PCR. Among them, Codon12 and Codon13 were located in the same amplification product, and th...
Embodiment 3
[0091] Example 3 Detection of HRAS gene mutation site by liquid chip with different ASPE primers
[0092] 1. Design of liquid phase chip preparation (selection of Tag sequence and Anti-Tag sequence)
[0093] Taking the HRAS gene G12S and G13S site mutation detection liquid chip as an example, the specific primer sequence of the 3' end of the ASPE primer was designed for the wild type and mutant type of G12S and G13S respectively, and the Tag sequence at the 5' end of the ASPE primer was selected from SEQ ID NO.1-SEQ ID NO.15, correspondingly, the anti-tag sequence coated on the microsphere and complementary to the corresponding tag sequence is selected from SEQ ID NO.31-SEQ ID NO.45. The specific design is shown in the following table (Table 7). The synthesis of ASPE primers, microspheres coated with anti-tag sequences, amplification primers, detection methods, etc. are as described in Example 1 and Example 2.
[0094] Table 7 Design of liquid phase chip preparation
[0095] ...
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