Real-time fluorescent nucleic acid constant-temperature amplification and detection kit for human seasonal influenza viruses H1N1 (HuH1N1)

A seasonal influenza and H1N1 technology, applied in fluorescence/phosphorescence, microbial measurement/inspection, biochemical equipment and methods, etc., can solve problems such as complicated operation, hindering large-scale promotion and use, and contamination of amplicons

Active Publication Date: 2014-01-22
SHANGHAI RENDU BIOTECH
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

At present, there are reverse transcriptase-polymerase chain reaction (Reverse Transcriptase-PCR, RT-PCR for short) and real-time fluorescent quantitative polymerase chain reaction (Real Time Fluorescent Quantified PCR, FQ PCR for short), RT-PCR adopts "gene amplification The operation mode of "amplification + amplicon detection" is easy to cause contamination of the amplicon, which often results in false positive or false negative of the experimental results.
Although real-time fluorescence quantitative PCR solves the above problems technically, its sensitivity and accuracy are high, but the operation is complicated and the detection cost is relatively expensive, which hinders its large-scale promotion and use in developing countries.

Method used

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  • Real-time fluorescent nucleic acid constant-temperature amplification and detection kit for human seasonal influenza viruses H1N1 (HuH1N1)
  • Real-time fluorescent nucleic acid constant-temperature amplification and detection kit for human seasonal influenza viruses H1N1 (HuH1N1)
  • Real-time fluorescent nucleic acid constant-temperature amplification and detection kit for human seasonal influenza viruses H1N1 (HuH1N1)

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0099] Example 1. Design of special primers and probes for real-time fluorescent nucleic acid constant temperature amplification detection of human seasonal influenza virus H1N1 (HuH1N1)

[0100] The present invention selects the non-secondary structure and highly conserved segment in the HuH1N1 virus HA gene as the amplified target sequence region (its nucleotide sequence is shown in sequence 1 in the sequence table), according to the principle of primer probe design, using DNAATAR, DNAman Software and artificially designed special primers and probe sequences for real-time fluorescent nucleic acid constant temperature amplification detection of human seasonal influenza virus H1N1 (HuH1N1), and obtained the following specific sequences:

[0101] (1) a capture probe (TCO, Target Capture Oligo) that can specifically combine with the target nucleic acid (HuH1N1 RNA) sequence of human seasonal influenza virus H1N1 (HuH1N1) as shown in Sequence 1 in the sequence listing, the capture...

Embodiment 2

[0105] Example 2, Preparation of Human Seasonal Influenza Virus H1N1 (HuH1N1) Real-time Fluorescent Nucleic Acid Constant Temperature Amplification Detection Kit

[0106] Using the special primers and probes provided in Example 1, the human seasonal influenza virus H1N1 (HuH1N1) real-time fluorescent nucleic acid constant temperature amplification detection kit of the present invention was obtained. The kit contains capture probes (TCO, Target Capture Oligo), T7 primers, nT7 primers, HuH1N1 detection probes, M-MLV reverse transcriptase and T7 RNA polymerase; when there is an internal standard in the kit, it also includes Labeled detection probes.

[0107] The capture probe exists in the nucleic acid extraction solution, the T7 primer, nT7 primer, HuH1N1 detection probe, and internal standard detection probe exist in the HuH1N1 detection solution, and the M-MLV reverse transcriptase and T7 RNA polymerase The enzyme exists in the SAT enzyme solution. Specifically, the kit is di...

Embodiment 3

[0140] Embodiment 3, detection sensitivity of real-time fluorescent nucleic acid constant temperature amplification of human seasonal influenza virus H1N1 (HuH1N1)

[0141] With the kit of the present invention (see Example 2 for the composition, there is no HuH1N1 internal standard in the kit, and there is no internal standard detection probe in the detection solution) the measured concentration is 1 × 10 4 copies / reaction, 1×10 3 copies / reaction, 1×10 2 Copies / reaction, 10copies / reaction of human seasonal influenza virus positive control RNA, determine the lower limit of sensitivity. Specific steps are as follows:

[0142] (1) dilution

[0143] Will 1×10 4 Copies / reaction of human seasonal influenza virus positive reference RNA, 10-fold serial dilution to 1×10 3 copies / reaction, 1×10 2 copies / reaction, 10copies / reaction.

[0144] (2) Nucleic acid extraction

[0145] 2.1 Add 200 μl lysate (containing HEPES 35mM, (NH 4 ) 2 SO 4 20mM), 200 μl influenza virus positive...

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Abstract

The invention discloses a real-time fluorescent nucleic acid constant-temperature amplification and detection kit for human seasonal influenza viruses H1N1 (HuH1N1). The real-time fluorescent nucleic acid constant-temperature amplification and detection kit comprises a capturing probe, a HuH1N1 detection primer T7, a primer nT7, a HuH1N1 detection probe, an M-MLV reverse transcriptase, T7 RNA (ribonucleic acid) polymerase and the like. The kit disclosed by the invention can detect HuH1N1 RNA in a swab, has the characteristics of high specificity, high sensitivity (which is up to 100copies / reaction), low pollution (due to easy degradation of the RNA of amplification products under a natural environment) and quickness in detection ( due to detection normally implemented within 50 minutes), plays an important role in clinical diagnosis of early infection of the human seasonal influenza and has a large application prospect.

Description

technical field [0001] The present invention relates to the biological detection technology of viruses, in particular to the primers used in the real-time fluorescent nucleic acid constant temperature amplification detection of human seasonal influenza virus H1N1 (HuH1N1), which combines specific target capture technology and real-time fluorescent nucleic acid constant temperature amplification detection technology, Probes and related kits. Background technique [0002] Influenza viruses are divided into three types: A, B, and C according to nucleoprotein (NP) and matrix protein (M). The influenza A virus genome consists of 8 negative-strand RNA segments, which are divided into 16 HA subtypes and 9 NA subtypes according to the surface hemagglutinin (HA) and neuraminidase (NA). [0003] Human seasonal influenza virus H1N1 (HuH1N1) belongs to the Orthomyxoviridae Influenza A virus genus, and the typical virus is spherical. Seasonal influenza virus will be popular and spread ...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/70C12Q1/68G01N21/64
CPCC12Q1/6844C12Q1/70C12Q2563/107C12Q2561/113
Inventor 方亮冯金梦于明辉居金良
Owner SHANGHAI RENDU BIOTECH
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