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Molecular inversion probe for detecting hepatitis B virus yvdd drug resistance mutation and its application

A technology of molecular inversion probe and hepatitis B virus, which is applied in the direction of microbe-based methods, recombinant DNA technology, microbiological measurement/testing, etc., can solve the problems of complicated DNA sequencing operations, difficult standardization and judgment of results, and poor repeatability. Achieve the effect of low cost, high specificity and simple operation

Inactive Publication Date: 2016-08-17
THE THIRD AFFILIATED HOSPITAL OF THIRD MILITARY MEDICAL UNIV OF PLA
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

DNA sequencing is limited due to the need for special detection instruments and complex operations
Gene chips can quickly and high-throughput detect drug-resistant gene mutations, but technically require fluorescent markers, and there are still defects such as poor repeatability and difficult standardized judgment of results.

Method used

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  • Molecular inversion probe for detecting hepatitis B virus yvdd drug resistance mutation and its application
  • Molecular inversion probe for detecting hepatitis B virus yvdd drug resistance mutation and its application
  • Molecular inversion probe for detecting hepatitis B virus yvdd drug resistance mutation and its application

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0052] 1. Design of Molecular Inversion Probe:

[0053] Aiming at the base sequences on both sides of the hepatitis B virus YVDD drug resistance site, a molecular inversion probe is designed, which consists of 6 parts: 2 complementary sequences of the target gene (gene complementary sequence A and gene complementary sequence B, respectively, as shown in SEQ ID NO:1, and SEQ ID NO:2), 1 UNG enzyme recognition site ("-TTUUUTT-"), 2 primer recognition sequences (respectively shown in SEQ ID NO:3 and SEQ ID NO: 4) and an unrelated sequence (shown in SEQ ID NO: 5) as the middle connecting sequence. There are 21 bases at the 5' end of the probe, and 19 bases at the 3' end to specifically recognize the base sequences on both sides of the YVDD drug resistance site. The secondary structure of the molecular inversion probe was analyzed using DNAMAN version6 software (Lynnon Biosoft, USA), and the irrelevant sequence in the middle was designed according to the principle of obtaining the...

Embodiment 2

[0080] Embodiment 2 Determination of Molecular Inversion Probe Detection Sensitivity

[0081] 1. The hepatitis B virus DNA was serially diluted to a concentration of 100nM, 10nM, 1nM, and 100pM.

[0082] 2. Apply the reaction system and optimized reaction conditions obtained in Example 1 to the determination of the detection sensitivity of the molecular inversion probe. That is, the molecular inversion probe was used to detect hepatitis B virus DNA at concentrations of 100 nM, 10 nM, 1 nM, and 100 pM, and the detection sensitivity was clarified.

[0083] The doubling dilution experiment of hepatitis B virus DNA shows that: the minimum template concentration that the molecular inversion probe can detect is 100pM (see Figure 6 ).

Embodiment 3

[0084] Example 3 Detection of hepatitis B virus YVDD drug-resistant site clinical isolates

[0085] 1. Isolate hepatitis B virus DNA from the plasma of clinical hepatitis B patients, and use sequencing methods to analyze the YVDD drug resistance sites of clinical isolates of hepatitis B virus, and clarify the wild type of hepatitis B virus YVDD drug resistance sites. strains and mutants.

[0086] 2. Apply the reaction system and optimized reaction conditions obtained in Example 1 to the analysis of the molecular inversion probe to the YVDD drug resistance site of the clinical isolate of hepatitis B virus. By comparing the results of molecular inversion probes and sequencing methods on the analysis of YVDD drug resistance loci in clinical isolates of hepatitis B virus, the accuracy of molecular inversion probes in the detection of clinical isolates was clarified.

[0087] The experiment of molecular inversion probe used in the detection of clinical isolates shows that the mole...

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Abstract

The invention belongs to the nucleic acid molecule detection field and relates to a molecular inversion probe technology for detecting YVDD drug-resistant mutation of hepatitis B virus, wherein a nucleotide sequence of the molecular inversion probe is expressed as SEQ ID NO: 8; an application method of the molecular inversion probe comprises the steps of designing a PCR (Polymerase Chain Reaction) amplification primer and establishing a single-base extension system of the molecular inversion probe which is applicable to annealing complementation and single-base extension between the molecular inversion probe and a target sequence; establishing a connection system of the molecular inversion probe which is applicable to a connection reaction of the molecular inversion probe; establishing a circumscribed enzyme digestion system for digesting the molecular inversion probe which is not cyclized; establishing a UNG (uracil-N-glycosylase) digestion system for digesting a cyclized molecular inversion probe as a single strand; establishing a PCR amplification reaction system which is applicable to a PCR amplification reaction taking the single stranded molecular inversion probe as a template; and detecting an amplification product. The method is high in sensitivity, specificity and degree of accuracy, simple to operate and applicable to clinical promotion in the absence of expensive detecting instrument.

Description

technical field [0001] The invention belongs to the field of nucleic acid molecular detection, and relates to a molecular inversion probe technology for detecting hepatitis B virus YVDD drug resistance mutation. Background technique [0002] Hepatitis B virus (HBV) is a kind of pathogenic microorganism that seriously endangers human health. At present, there are about 30 million hepatitis B patients in my country, and more than 150 million carriers. About 50% of liver cirrhosis and 70%-90% of liver cancer patients are caused by chronic HBV infection. Therefore, the chronic infection of HBV has become a serious public health problem in our country. [0003] Antiviral therapy is the key to prevent and control the progression of hepatitis B and related liver diseases. Nucleoside analog therapy is one of the most commonly used anti-HBV treatment options in clinical practice. It can inhibit the activity of HBV DNA polymerase, reduce the synthesis of HBV DNA, and inhibit the rep...

Claims

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Application Information

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Patent Type & Authority Patents(China)
IPC IPC(8): C12Q1/70C12Q1/68C12N15/11C12R1/93
CPCC12Q1/6858C12Q1/70C12Q2533/101C12Q2533/107C12Q2521/319
Inventor 陈鸣唱凯皮燕邓少丽鲁卫平王丰贾双荣李发科
Owner THE THIRD AFFILIATED HOSPITAL OF THIRD MILITARY MEDICAL UNIV OF PLA
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