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Detection kits for detecting HLA-B27 gene and method

An HLA-B27, detection kit technology, applied in biochemical equipment and methods, microbial determination/inspection, etc., can solve the problems of low specificity of fluorescent monoclonal antibodies, affecting the accuracy of results, and complicated operations, achieving The effect of reducing the risk of cross-contamination, avoiding non-specific amplification, and simplifying the operation process

Inactive Publication Date: 2017-03-22
武汉海吉力生物科技有限公司
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  • Application Information

AI Technical Summary

Problems solved by technology

However, due to the particularity of the gene structure and the designed PCR primers and other factors, there may be overlapping peaks in the sequencing results, which is not conducive to the interpretation of the results
Moreover, sequencing has special requirements for reagents and instruments, complicated operation, relatively high cost, slow speed, and low throughput, and is not suitable for rapid auxiliary diagnosis of clinical diseases
The principle of the PCR-SSP method is to design specific primers for direct PCR amplification based on known HLA-B27 gene fragments, and detect the PCR products by agarose gel electrophoresis. The results are intuitive and easy to promote in grassroots medical and health units. However, the biggest drawback of this method is that there are many steps, the operation is easy to pollute, and it is prone to false positives. It cannot be batched and automated.
Flow cytometry (FCM) has the advantages of rapidity, high degree of automation, and is suitable for large-scale sample detection, but the specificity of the fluorescent monoclonal antibody relied on in this method is not high, and it is easy to mix with many other HLA antigens, such as HLA-B7 , HLA-B22, etc. have interference reactions, which affect the accuracy of the results
In addition, flow cytometry is a serological level test and cannot determine the exact genotype of the sample
Moreover, flow cytometry equipment is expensive in materials, high in maintenance costs, and has high technical requirements for operators, which limits its promotion and application in primary medical units.

Method used

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  • Detection kits for detecting HLA-B27 gene and method
  • Detection kits for detecting HLA-B27 gene and method
  • Detection kits for detecting HLA-B27 gene and method

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0046] Embodiment 1 primer, probe, positive reference gene sequence design

[0047] HLA-B*27:04 (5 subtypes), HLA-B* published according to NCBI database and IPD-IMGT / HLA database (http: / / www.ebi.ac.uk / ipd / imgt / hla / ) 27:05 (31 subtypes) gene sequence and its reference locus HLA-B*07:02:01 gene sequence, determine the specific conserved site of the gene through sequence comparison, and design according to the above polymorphic sites Primers and probes, the primers and probes designed in the present invention are all combined with the conserved sites of HLA-B*27:04 or HLA-B*27:05 genes, and can detect all gene subtypes thereof. After experimental verification, the sequences of the detection primers and probes were finally determined as follows:

[0048] (1) PCR primer pair 1 and its specific detection probe 1 for HLA-B*27:04 gene detection, the nucleotide sequence is as follows:

[0049] HLA-B*27:04 gene amplification upstream primer (1F), SEQ ID No.1:

[0050] 5'-GCAAGGCCAAG...

Embodiment 2

[0073] Embodiment 2 is used for detecting the kit of HLA-B27 locus

[0074] The real-time fluorescent PCR kit for rapid detection of HLA-B27 gene loci includes the following components:

[0075] PCR primer pair 1 and detection probe 1 for HLA-B*27:04 gene detection:

[0076] HLA-B*27:04 gene amplification upstream primer 1: the nucleotide sequence is shown in SEQ ID No.1;

[0077] HLA-B*27:04 gene amplification downstream primer 1: the nucleotide sequence is shown in SEQ ID No.2;

[0078] HLA-B*27:04 gene detection probe 1: the nucleotide sequence is shown in SEQ ID No.3;

[0079] PCR primer pair 2 and detection probe 2 for HLA-B*27:05 gene detection:

[0080] HLA-B*27:05 gene amplification upstream primer 2: the nucleotide sequence is shown in SEQ ID No.4;

[0081] HLA-B*27:05 gene amplification downstream primer 2: the nucleotide sequence is shown in SEQ ID No.5;

[0082] HLA-B*27:05 gene detection probe 2: the nucleotide sequence is shown in SEQ ID No.6;

[0083] Wher...

Embodiment 3

[0088] Embodiment 3 adopts the method of real-time fluorescent PCR to detect HLA-B27 locus

[0089] The HLA-B*27:04 gene detection primer pair and detection probe designed according to Example 1, the HLA-B*27:05 gene detection primer pair and the detection probe are synthesized, and can be synthesized at the 5' end of the detection probe A fluorescent group is connected, and a quenching group is connected to the 3' end, wherein the fluorescent group is any one of FAM, JOE, CY3, HEX, and VIC, and the quenching group is any of MGB, BHQ1, TAMRA, and BHQ2 A sort of.

[0090] Wherein, when the probe is synthesized in this embodiment, the probe is connected to a fluorescent and quenching group, the fluorescent-quenching group of the detection probe 1 and 2 is preferably FAM-MGB, and the fluorescent-quenching group of the quality control probe is FAM-MGB. The quenching group is preferably JOE-TAMRA. Of course, detection probes 1 and 2 and quality control probes using other fluoresc...

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Abstract

The invention discloses a group of detection kits for rapidly detecting an HLA-B27 gene and establishes a relatively efficient and sensitive method for rapidly detecting the HLA-B27 gene. The detection kits for rapidly detecting the HLA-B27 gene are convenient to use, simple to operate and good in detection effect, greatly simplifies the operation process and reduce pollution during operation, have the characteristics of high sensitivity, high specificity and high selectivity and realize typing detection of the HLA-B27 gene. The provided detection method adopts completely closed tube operation and is simple, convenient and quick to operate; detection results are obtained by directly detecting a fluorescence signal Ct value in a PCR direct detection process, post-processing such PCR electrophoresis detection is not needed, the defects that pollution is easily caused and the false positive rate is high with the conventional PCR technology are overcome, and the method can effectively avoid non-specific amplification and is suitable for large-volume sample detection.

Description

technical field [0001] The invention belongs to the field of biotechnology, and in particular relates to a detection kit and a method for detecting HLA-B27 gene by fluorescent quantitative PCR technology. Background technique [0002] Human leukocyte antigen (HLA), also known as major histocompatibility antigen (MHC), is located in the 6p21.3 region of the short arm of chromosome 6, with a total length of about 3.6Mb. The HLA gene is the most complex human gene system known so far. According to its arrangement on the chromosome, it can be divided into three categories: class I gene region includes HLA-A, HLA-B and HLA-C; class II gene region includes HLA- DR, HLA-DP and HLA-DQ; class III gene regions are located between the above two types of gene regions, and mainly encode products such as complement and heat shock proteins. [0003] In 1973, Brewerton first reported that human histocompatibility antigen HLA-B27 (human leucocyteantigen B27, HLA-B27) was highly correlated w...

Claims

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Application Information

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IPC IPC(8): C12Q1/68
CPCC12Q1/686C12Q2563/107C12Q2545/101C12Q2545/113
Inventor 严睿韬段卫涛赵平锋
Owner 武汉海吉力生物科技有限公司
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