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Constant-temperature detection method for identifying lactobacillus brevis as well as special primer and kit thereof

A technology of Lactobacillus brevis and reagents is applied in the field of constant temperature detection method for identifying Lactobacillus brevis and special primers and kits, which can solve the problems of complicated operation, unstable results, and high requirements for operators, and achieves easy identification of results and high detection efficiency. Short-cycle, highly specific effects

Active Publication Date: 2020-10-30
BEIJING YANJING BREWERY +1
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

Among all current detection methods, this method has high accuracy, low cost, and low requirements for experimenters, and can meet the needs of grassroots applications. However, no matter which medium is used for culture and identification, the detection of the results requires 5 More than 7 days, unable to reflect the beer pollution in time, unable to meet the needs of rapid quality monitoring
Bioluminescence and immunology methods mainly include ATP bioluminescence detection technology and antigen-antibody detection method; ATP bioluminescence detection technology achieves the purpose of detecting microorganisms by detecting ATP produced in the metabolic process of microorganisms, and the detection results can be obtained quickly when using this method for detection , can also quantify microorganisms, but cannot qualitatively identify different microorganisms, and is susceptible to external interference, resulting in unstable results; the antigen-antibody method is based on the principle of specific combination of antigen and corresponding antibody to form a precipitation complex for qualitative detection of microorganisms, including agglutination reaction, precipitation reaction, ELISA, etc. This microbial diagnostic method has the advantages of strong specificity, but the antibody screening process is complicated, the cost of reagent detection is expensive, and it is easily affected by human interference, which cannot meet the detection needs of wineries at the grassroots level
[0004] Molecular biology methods are based on nucleic acid level detection. Common molecular biology methods applied to microbial detection include fluorescence in situ hybridization (FISH), gene chip technology, and polymerase chain reaction PCR. The advantage of these methods is specificity. Strong and time-consuming, but most of them are difficult to be effectively carried out in winery testing due to complex operations and high requirements for equipment and operators.

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  • Constant-temperature detection method for identifying lactobacillus brevis as well as special primer and kit thereof
  • Constant-temperature detection method for identifying lactobacillus brevis as well as special primer and kit thereof
  • Constant-temperature detection method for identifying lactobacillus brevis as well as special primer and kit thereof

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0060] Example 1. Primer Design for LAMP Detection of Lactobacillus brevis

[0061] Multiple specific nucleic acid fragments of Lactobacillus brevis were screened through a large number of sequence comparisons, and after LAMP primer design and pre-experimental effect verification, a LAMP primer set with the best effect was finally obtained, named as the specific primer set. The target sequence of the specific primer set is shown in sequence 1 of the sequence listing.

[0062] The specific primer set consists of six primers, the sequences of which are as follows:

[0063] Primer F3 (sequence 2 of the sequence listing): 5'-AAACCGCCAAGCCGATTG-3';

[0064] Primer B3 (sequence 3 of the sequence listing): 5'-GCGGTTTTGGCTTTTAAGGT-3';

[0065] Primer FIP (sequence 4 of the sequence listing): 5'-ACCAATTGCTGGTCCAGGTGTTAACGTTGGAACTCCCATCAC-3';

[0066] Primer BIP (sequence 5 of the sequence listing): 5'-AATACGCATACCAAGCCGCTCAGCCTGTTGCTGACGTTCAT-3';

[0067] Primer LF (sequence 6 of t...

Embodiment 2

[0069] Embodiment 2, the effect comparison of primer set

[0070] When screening to obtain specific primer sets, pre-experiments were carried out on a large number of primer sets to compare effects. This embodiment is only an exemplary display of partial effect comparisons.

[0071] The primer sequences of the three primer sets are listed in Table 1. Each primer was artificially synthesized. The P1 primer set is the specific primer set in Example 1. The P2 primer set and the P3 primer set are exemplary other primer sets in the screening process.

[0072] Table 1

[0073]

[0074] Three primer sets were used to carry out LAMP reaction to compare the effects.

[0075] The tested bacteria are: Lactobacillus brevis CICC24450.

[0076] 1. Take the bacteria liquid for testing (bacterial concentration is 10 5 CFU / mL), treated at 99°C for 5min, then terminated the reaction at 4°C, collected the supernatant to obtain a template solution containing genomic DNA.

[0077] 2. Pe...

Embodiment 3

[0082] Embodiment 3, optimization of reaction temperature

[0083] The tested bacteria are: Lactobacillus brevis CICC24450.

[0084] 1. Take the bacteria liquid for testing (bacterial concentration is 10 5 CFU / mL), treated at 99°C for 5min, then terminated the reaction at 4°C, collected the supernatant to obtain a template solution containing genomic DNA.

[0085] 2. Perform LAMP.

[0086] Reaction system is with embodiment 2. The specific primer set of Example 1 was used.

[0087] Reaction conditions: a certain temperature (60°C, 61°C, 62°C, 63°C, 64°C, 65°C, 66°C or 67°C), 30 minutes. The reaction was carried out in a Genie II real-time fluorescence detector.

[0088] Fluorescence amplification curve see image 3 . The optimal temperature for amplification is 65°C.

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Abstract

The invention discloses a constant-temperature detection method for identifying lactobacillus brevis as well as a special primer and a kit thereof. The specific primer group provided by the inventionis composed of a primer F3, a primer B3, a primer FIP, a primer BIP, a primer LF and a primer LB, and the six primers are sequentially shown as sequences 2-7 in a sequence table. The application of the specific primer group is as follows (b1) or (b2): (b1) identifying or assisting in identifying lactobacillus brevis; (b2) detecting whether the to-be-detected sample contains lactobacillus brevis ornot. The specific gene segment of lactobacillus brevis is amplified by using a loop-mediated isothermal amplification technology, the blank of the LAMP detection method of lactobacillus brevis in beer is filled, and the detection method has the advantages of strong specificity, simplicity in operation, rapidness, convenience and the like, can be used for beer quality monitoring, and is suitable for basic application and on-site rapid detection of winery.

Description

technical field [0001] The invention belongs to the field of biotechnology, and relates to a constant temperature detection method for identifying Lactobacillus brevis, as well as special primers and a kit. Background technique [0002] Lactobacillus breris is widely distributed in nature, belongs to Lactobacillus order, Lactobacillus family, and Lactobacillus genus, and is commonly found in milk, yoghurt, cheese, and sour pickles. When Lactobacillus brevis exists in beer, it often causes the acidity and viscosity of beer to increase, and what's more, it causes beer turbidity and precipitation, which affects the taste and quality of beer. Beer quality incidents caused by Lactobacillus brevis contamination are not uncommon. According to statistics, more than 50% of daily beer contamination incidents are caused by Lactobacillus brevis. Rapid detection of Lactobacillus brevis has become an urgent problem to be solved in the quality control of breweries. [0003] At present, th...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12N15/11C12Q1/689C12Q1/6844C12Q1/04
CPCC12Q1/689C12Q1/6844C12Q2531/119C12Q2527/107C12Q2563/107
Inventor 郭立芸刘秀谢鑫梁玉林徐文文丁梦璇周鹏飞宋玉梅尹建军贾凤超宋全厚
Owner BEIJING YANJING BREWERY
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