Corn gene ZmRAVL1 and functional site and application thereof
A kind of application and gene technology, applied in the field of maize gene ZmRAVL1 and related functional sites, can solve the problems that the research of maize leaf angle is still at the level of preliminary positioning, and the genetic and molecular regulation network of maize leaf angle is far from elucidated.
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Embodiment 1
[0091] Example 1 Initial and fine positioning of the ZmRAVL1 gene
[0092] Using a set of RIL populations constructed by backcrossing and selfing the inbred line W22 of maize and the ancestral species - teosinte CIMMYT 8759 (abbreviated as 8759 in this paper), the QTL of leaf angle was initially mapped. The phenotypic value of the angle between the angle and the flag leaf was blurred and then used as the phenotype input value for QTL mapping, combined with 19378 high-density and high-quality molecular markers, using the multi-QTL model in R / qtl, using R software (Version 3.1. 0) Carry out QTL mapping. After 1000 times of permutation test (Permutation test) (significance P=0.01), it was determined that the QTL significance thresholds of the angle between the upper leaf on the panicle and the angle between the flag leaf were both LOD=5.
[0093] For corn ear upper leaf angle, a total of 10 QTLs were mapped, among which UPA2 (Compact Plant Architecture 2) located on chromosome 2...
Embodiment 2
[0124] Example 2 Nucleic acid molecular information of ZmRAVL1
[0125] The nucleic acid molecular sequence of ZmRAVL1 was obtained on maizeGDB (https: / / www.maizegdb.org / ) (because the genome sequence of the maize inbred line B73 and the genome sequences of several other maize inbred lines have been determined, only the nucleic acid sequence As far as most genes are concerned, the sequences of most genes are known, and the sequences of all genes including this gene can be obtained from multiple websites such as maizeGDB; although the function of this gene can be predicted on websites such as maizeGDB, but The function of this gene regulating the angle of corn leaves was discovered by the inventor for the first time. The materials used in the present invention are corn inbred line W22 and corn wild species Teosinte 8759, W22 has completed sequencing, and the genome sequence has also been released; The sequence of the gene in Teosinte 8759 was obtained by referring to the genome...
Embodiment 3
[0129] Example 3 Protein molecular information of ZmRAVL1
[0130] (1) Sequence encoding protein
[0131] ( https: / / www.maizegdb.org / gene_center / gene / GRMZM2G102059 )
[0132] MEFASSSSRFSREEDEEEEQEEEEEEEEASPREIPFMTAAATADTGAAASSSSPSAAASSGPAAAPRSSDGAGASGSGGGGSDDVQVIEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDAAANEKGQLLSFEDRAGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFCRGAGDTARDRLFIDWKRRADSRDPHRMPRLPLPMAPVASPYGPWGGGGGGGAGGFFMPPAPPATLYEHHRFRQALDFRNINAAAAPARQLLFFGSAGMPPRASMPQQQQPPPPPHPPLHSIMLVQPSPAPPTASVPMLLDSVPLVNSPTAASKRVRLFGVNLDNPQPGTSAESSQDANALSLRTPGWQRPGPLRFFESPQRGAESSAASSPSSSSSSKREAHSSLDLDL
[0133] (SEQ ID No: 27) (see image 3 )
[0134] (2) Domains of encoded proteins
[0135] (http: / / smart.embl-heidelberg.de / smart / show_motifs.pl)
[0136] The structural domain prediction of the amino acid sequence encoded by the gene in the Smart website shows that the amino acid sequence encoded by the gene contains a B3 domain ( image 3 Amino acid sequences marked in red). In the gramene web...
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