Materials and methods for the efficient production of acetate and other products

a technology applied in the field of materials and methods for the efficient production of acetate and other products, can solve the problems of reducing the level of acetate production using these methods, increasing the cost of materials, increasing the cost of acetate purification, and waste disposal, and achieving the effects of increasing acetate production, reducing the loss of substrate carbon, and increasing acetate production

Inactive Publication Date: 2004-08-05
UNIV OF FLORIDA RES FOUNDATION INC
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Benefits of technology

0028] In accordance with the subject invention, competing pathways are eliminated by chromosomal inactivation of genes encoding lactate dehydrogenase, pyruvate formatelyase, and fumarate reductase (.DELTA.(focA-pflB)::FRT .DELTA.frdBC .DELTA.ldhA), (F.sub.1F.sub.0)H.sup.+-ATP synthase (atpFH), alcohol / aldehyde dehydrogenase (adhE), and 2-ketoglutarate dehydrogenase (sucA), which increases the production of acetate.
0029] Using a simple two-step batch feeding strategy can increase acetate production. Specifically, a second addition of 3% glucose added at the end of the growth phase (12 h) and metabolized to completion results in 78% of the theoretical maximum. A further increase in acetate production can be obtained by combining the two-step batch feeding strategy with a nitrogen limitation, which results in 86% of the theoretical maximum.
0030] The subject invention provides a method to reduce the loss of substrate carbon into cell mass and / or into carbon dioxide. Also, the subject invention provides a method to reduce oxygen demand during bioconversion process.
0031] The use of mineral salts medium, lack of antibiotic resistance genes or plasmids, high yield of homo-acetate, and high product purity achieved according to the subject invention are advantageous because of reduced costs associated with nutrients, purification, containment, BOD, and waste treatment.
0032] In an alternative embodiment, the subject invention provides a new biocatalyst for the efficient production of pyruvate from glucose that requires only simple mineral salts as nutrients.

Problems solved by technology

Acetic acid has been produced using microbial systems; however, the production of acetic acid in microbial systems competes with the production of CO.sub.2 and cell mass.
All three of these current microbial acetic acid production systems require complex nutrients, which increase the cost of materials, acetate purification, and waste disposal.
Due to the competing production of dicarboxylic acids and cell mass from glucose, the level of acetate production using these methods has been relatively low.
Indeed, none of these methods have been reported to grow and produce acetate efficiently in mineral salts media containing sugar.
In fact, each of these methods requires the use of complex nutrients, which ultimately increases the cost of materials, acetate purification, and waste disposal.
This process involves toxic solvents and is energy intensive with an estimated production cost of $8,650 per ton of pyruvate.
As noted above, T. glabrata strains used in the commercial process are multivitamin auxotrophs requiring tight regulation of vitamin concentrations which result in complex vitamin feeding strategies during fermentation (Li, Y., J. Chen, and S.-Y.
Previous E. coli strains constructed for pyruvate production were cultured in complex media and have been plagued by low titers and yields (Tomar, A. et al.
Nutrients in culture medium often represent a major cost associated with commercial fermentations.

Method used

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  • Materials and methods for the efficient production of acetate and other products
  • Materials and methods for the efficient production of acetate and other products
  • Materials and methods for the efficient production of acetate and other products

Examples

Experimental program
Comparison scheme
Effect test

example 1

Construction of a Homo-Acetate Fermentation Pathway in E. coli W3110

[0096] Fermentation of sugars through native pathways in E. coli produces a mixture of organic acids, ethanol, CO.sub.2 and H.sub.2 (FIG. 1). Acetate and ethanol are typically produced in approximately equimolar amounts from acetyl.about.CoA to provide redox balance (Clark, D. P., 1989 "The fermentation pathways of Escherichia coli. FEMS" Microbiol. Rev. 63:223-234; de Graef, M. R., S. Alexeeva, J. L. Snoep, and M. J. Teixiera de Mattos, 1999 "The steady-state internal redox state (NADH / NAD) reflects the external redox state and is correlated with catabolic adaptation in Escherichia coli" J. Bacteriol. 181:2351-2357). To construct a strain for homo-acetate production, removable antibiotic resistance genes were used to sequentially inactivate chromosomal genes encoding alternative pathways.

[0097] Inspection of native pathways in E. coli (FIG. 1) indicated that the production of acetate and CO.sub.2 as sole metabolic ...

example 2

Effects of Gene Disruptions on Growth and Glycolytic Flux

[0106] TC36 was genetically engineered for the production of acetate from carbohydrates such as glucose. Batch fermentations with pH control were used to compare the performance of this strain with W3110 (wild type) and two intermediate strains used for construction, SZ47(.DELTA.pflB,.DELTA.f-rdCD,.DELTA.ldhA) and TC24(.DELTA.pflB,.DELTA.frdCD,.DELTA.ldhA .DELTA.atpFH). Under 5% oxygen saturation and 3% glucose (37.degree. C.) test conditions, the broth pH was maintained at neutrality to minimize toxicity from undissociated acids (Chotani, G., T. Dodge, A. Hsu, M. Kumar, R. LaDuca, D. Trimbur, W. Weyler, and K. Sanford, 2000 "The commercial production of chemicals using pathway engineering" Biochim. Biophys. Acta 1543:434-455).

[0107] Disruption of oxidative phosphorylation and the cyclic function of the tricarboxylic acid cycle, elimination of the primary fermentation pathways, and the production of acetate as the primary end-...

example 3

Production of Other Organic Acids

[0110] A substantial portion of glucose carbon was not recovered in the carbon balance (Table 3) for W3110 (40%) and SZ47 (80%). This loss is attributed to the production of volatile products by high flux through the tricarboxylic acid cycle (CO.sub.2) but may also include the reduction of acetyl.about.CoA to acetaldehyde and ethanol (FIG. 1).

3TABLE 3 Summary of fermentation products. Cell Carbon Yield Fermentation Products.sup.a (mM) Recovery.sup.c Strain Conditions (g / liter) Acetate 2-ketoglutarate Fumarate Lactate Pyruvate Succinate Yield.sup.b(%) (% substrate C) W3110 3% glucose 4.5 30 39 0.8 33 <1 5 9 60 5% DO SZ47 3% glucose 5.3 6 11 0.9 <1 1 3 2 20 5% DO TC24 3% glucose 4.4 156 1 1.0 <1 <1 2 47 66 5% DO TC36 3% glucose 3.5 224 16 0.4 <1 0 4 68 89 5% DO _0.2 _14 _6 _0.1 _0.5 _1 TC36 3% glucose 3.2 190 24 <1 <1 <1 3 57 88 15% DO TC36 3% Glucose 2.5 220 31 <1 <1 <1 10 66 95 5% DO N-limited TC36 3 + 3% glucose 3.8 523 21 <1 3 14 2 78 95 5% DO TC36...

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Abstract

The subject invention provides materials and methods wherein unique and advantageous combinations of gene mutations are used to direct carbon flow from sugars to a single product. The techniques of the subject invention can be used to obtain products from native pathways as well as from recombinant pathways. In preferred embodiments, the subject invention provides new materials and methods for the efficient production of acetate and pyruvic acid.

Description

[0001] This application claims the benefit of U.S. Provisional Application Serial No. 60 / 424,372, filed Nov. 6, 2002.BACKGROUND OF INVENTION[0003] Recent trends toward the production of "green" chemicals will require development of innovative synthesis techniques that are highly efficient and cost effective.[0004] Throughout the past decade, a number of traditional chemical companies in the United States and Europe have begun to develop infrastructures for the production of compounds using biocatalytic processes. Considerable progress has been reported toward new processes for commodity chemicals such as ethanol (Ingram, L. O., H. C. Aldrich, A. C. C. Borges, T. B. Causey, A. Martinez, F. Morales, A. Saleh, S. A. Underwood, L. P. Yomano, S. W. York, J. Zaldivar, and S. Zhou, 1999 "Enteric bacterial catalyst for fuel ethanol production" Biotechnol. Prog. 15:855-866; Underwood, S. A., S. Zhou, T. B. Causey, L. P. Yomano, K. T. Shanmugam, and L. O. Ingram, 2002 "Genetic changes to opti...

Claims

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Application Information

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Patent Type & Authority Applications(United States)
IPC IPC(8): C12P7/40C12N1/21C12P7/54
CPCC12N9/14C12N9/0008C12P7/40Y02E50/17C12N9/0006C12N9/001C12P7/54C12N9/1029Y02E50/10
Inventor CAUSEY, THOMAS B.INGRAM, LONNIE O'NEALZHOU, SHENGDESHANMUGAM, KEELNATHAN T.
Owner UNIV OF FLORIDA RES FOUNDATION INC
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