Method for detecting various respiratory viruses and primers and probes thereof

A respiratory and virus technology, applied in the field of biochips and diagnostic reagents, can solve the problems of early diagnosis of unfavorable diseases, high labor and cost, interference detection, etc., and achieve high sensitivity, strong specificity, and good stability

Inactive Publication Date: 2011-03-16
FUDAN UNIV +1
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

However, there are more or less defects in these methods: for example, the isolation and culture method is technically difficult, and it usually takes more than 3 to 5 days to obtain the results of etiological diagnosis and drug susceptibility, and it is difficult to carry out etiological diagnosis and drug resistance early in clinical practice. However, when using immunological methods to detect virus-specific antibodies, it is not only necessary to collect double sera in the acute phase and recovery phase of the patient's infection, but there may also be antige

Method used

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  • Method for detecting various respiratory viruses and primers and probes thereof
  • Method for detecting various respiratory viruses and primers and probes thereof

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0035] Example 1: Preparation of various respiratory virus-specific nucleic acid probe microsphere groups.

[0036] 1. Sequence synthesis of nucleic acid probes

[0037] Various nucleic acid probe sequences were synthesized according to the following sequences, all of which were modified with amination at the 5' end and connected with a C12 adjacent arm sequence:

[0038] name

sequence

SEQ ID No:

AdV-P

gccaccgacacctacttca

44

hMPV-P

tacccatgcaaagtcagc

45

IfA-P

gagatcgcacagagacttga

46

IfB-P

taattgtctccctcttctgg

47

RSV-P

ctctggtagaagattgtgcta

48

BOV-P

ctcctctgcgatctctatat

49

RV-P

atcccgcaattactcattac

50

HKU1-P

tcctgttgttataggaaccac

51

NL63-P

aacgtacaggtgttattttg

52

SARS-P

agggtacagtgaataatgct

53

PIV1-P

tgtagtctcattcacagtgg

54

PIV2-P

ataatagaaagcaagtctcagt

55

PIV3-P

actctcgatttttgtgagtc

...

Embodiment 2

[0066] Example 2: Detection of respiratory viruses in 5 clinical samples.

[0067] 1. Sample preparation

[0068] Extract the total RNA and genomic DNA of clinical samples No. 1-5 by conventional methods, measure the concentration, and set aside.

[0069] Second, the reverse transcription reaction.

[0070] 1. Each reverse transcription primer was synthesized according to the following sequence:

[0071] name

sequence

SEQ ID No:

hMPV-rtp

agactgtgaaacaagaggagac

1

IfA-rtp

tattgaaagatgagtcttctaacc

2

IfB-rtp

ttgaatgcatatgaccagagt

3

[0072] RSV-rtp

gtaataactaaattagcagcagg

4

RV-rtp

tatatatattgtcaccataagc

5

HKU1-rtp

ccaaaactaaactactaacaat

6

NL63-rtp

gtaacaataacacacccacttctg

7

SARS-rtp

cattctcctaagaagctattaa

8

PIV1-rtp

tcatcaaacttaatcactcaagg

9

PIV2-rtp

aagctgttcagtcactgctatac

10

PIV3-rtp

gacatggcataatgtgct...

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Abstract

The invention belongs to the technical fields of biochips and diagnostic reagents, and discloses a method for detecting various respiratory viruses, and primers and probes thereof. In the invention, nucleotide sequences of 14 respiratory viruses, namely adenovirus, human metapneumovirus, influenza virus A, influenza virus B, respiratory syncytial virus, bocavirus, rhinovirus, coronavirus (HKU1, NL63 and SARS), and parainfluenza virus (type I, type II, type III and type IV) are analyzed, and corresponding reverse transcription primers, PCR primers and specific probes are designed. Specific gene segments are amplified by reverse transcription and multiple asymmetric PCR methods; a fluorescence-coded microsphere group coupled with the virus specific probes and the PCR amplification product are incubated and hybridized by liquid phase chip technology; and finally the Bio-PlexTM200 is used for detection. The detection method has the advantages of high flux, high specificity and sensitivity, stable results and good repeatability, the detection method is easy to operate, and the detection speed is high.

Description

technical field [0001] The invention belongs to the technical field of biochips and diagnostic reagents, in particular to a method for detecting a variety of respiratory viruses and its primers and probes, in particular to the use of specific nucleic acid probes for respiratory viruses combined with multiple polymerases in a liquid phase chip Chain reaction (PCR) technology, a method for the rapid detection of multiple respiratory viruses. Background technique [0002] Respiratory diseases are one of the most common fatal diseases in the world. There are many kinds of pathogenic microorganisms that cause acute respiratory infections, among which viruses account for more than 90%, and the clinical manifestations and symptoms caused by them are similar: such as fever, headache, sore limbs, Sneezing, runny nose, stuffy nose, coughing, sore throat, etc. Common respiratory viruses include adenovirus (AdV), human metapneumovirus (hMPV), influenza virus type A (IfA), influenza vir...

Claims

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Application Information

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IPC IPC(8): C12Q1/70C12Q1/68C12N15/11G01N21/64
CPCY02A50/30
Inventor 陈沁姜丽娟肖海潮李瑶裘敏燕
Owner FUDAN UNIV
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