Quick extraction method for total DNA of yeast-like fungi for nucleic acid amplification

A yeast-like fungus and extraction method technology, which is applied in the field of rapid extraction of total DNA of yeast-like fungi, can solve the problems of slow kit speed, DNA degradation, difficulty in transportation and storage, and achieve no irritating smell, high extraction rate, large The effect of the extraction effect

Inactive Publication Date: 2016-05-18
SECOND MILITARY MEDICAL UNIV OF THE PEOPLES LIBERATION ARMY +1
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

Although there are multiple commercially available kits and classic laboratory methods, there are multiple defects as follows: 1. The kit is expensive, and YeaStar TM GenomicDNAKit Yeast Extraction Kit, for example, extracts nearly 25 yuan per sample, and zymoZRFungal/BacterialDNAKit extraction kit extracts nearly 20 yuan per sample; 2. The extraction speed is slow, because most commercially available kits and laboratory methods have added The digestion steps of proteinase K and helicase make the extraction time process take several hours, such as Sangon EzupColumnYeastGenomicDNAPurificationKit kit, only the enzyme digestion step needs more than four hours (one hour for proteinase K, three hours for helicase); 3. Transportation Preservation is difficult, because protease activity is more sensitive to transportation conditions, the kit has certain requirements for transportation and storage
4. Toxic and harmful substances, such as benzyl chloride in the benzyl chloride extraction method is a carcinogen, phenol chloroform in the classic phenol chlorine extraction method will also stimulate the human respiratory tract, and the mercaptoethanol commonly used in the kit is highly toxic. has a strong

Method used

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  • Quick extraction method for total DNA of yeast-like fungi for nucleic acid amplification
  • Quick extraction method for total DNA of yeast-like fungi for nucleic acid amplification
  • Quick extraction method for total DNA of yeast-like fungi for nucleic acid amplification

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0050] Embodiment 1: extract DNA effect:

[0051] Five fungi were selected for DNA extraction:

[0052] Table 1 This method is for the extraction effect of a large amount of fungi

[0053]

[0054]

[0055] Total is 10 7 -10 1 After extracting DNA from the above strains by TCM method, the results of real-time fluorescent quantitative PCR (RT-PCR) using NS5 and NS6 fungal universal primers were all amplified successfully. No amplification was seen in the no-template control (NTC).

[0056] Primer sequence:

[0057] NS5:AACTTAAAGGAATTGACGGAAG (SEQ ID NO.1)

[0058] NS6: GCATCACAGACCTGTTATTGCCTC (SEQ ID NO. 2)

[0059] The amplification system is:

[0060] PremixExTaq TM II (TliRNaseHPlus) (takara) 12.5μl

[0061] NS51μl

[0062] NS61μl

[0063] DNA template 10.5μl

[0064] 25μl total

[0065] Amplification conditions

[0066] 95°C for 30 seconds-{95°C for 5 seconds-55°C for 30 seconds-72°C for 60 seconds} a total of 40 cycles-95°C for 5 seconds-60°C for 30 ...

Embodiment 2

[0068] Embodiment 2: Comparison with other extraction methods

[0069] The comparison between the method of the present invention and other fungal extraction kits is shown in Table 2, and the comparison with other methods reported in the literature is shown in Table 3.

[0070] Table 2 Comparison with other fungal extraction kits

[0071]

[0072]

[0073] Table 3 Comparison with methods reported in the literature

[0074]

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PUM

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Abstract

The invention relates to the field of molecular biology of fungi, in particular to a quick extraction method for total DNA of yeast-like fungi for nucleic acid amplification. The method integrates the freeze-thaw method, the chemical cleavage method and the mechanical wall-breaking method skillfully, DNA extraction is completed within 10-20 min, and the cheap, non-toxic and efficient fungus DNA extraction method is the fastest so far. The extraction method has the advantages of quickness, sensitivity, non-toxicity, cheapness and the like and is applicable to most of the yeast-like fungi.

Description

technical field [0001] The invention relates to the research field of molecular biology of fungi, in particular to a method for rapidly extracting total DNA of yeast-like fungi for nucleic acid amplification. Background technique [0002] In recent decades, great progress in the field of biomedicine has promoted the remarkable improvement of human disease prevention and control capabilities. However, with the widespread use of hematopoietic stem cell and solid organ transplantation, tumor chemotherapy, immunosuppressants, broad-spectrum antibiotics, various catheterization techniques, and the continued spread of HIV around the world, the morbidity and mortality of various invasive fungal infections There is a significant upward trend globally. For example, according to conservative estimates, there are 250,000 new cases of invasive candidiasis each year in medically developed areas, causing more than 50,000 deaths, and the population prevalence rate is 2-14 per 100,000 peop...

Claims

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Application Information

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IPC IPC(8): C12N15/10C12Q1/68C12R1/645
CPCC12N15/10C12Q1/68C12Q1/6806C12Q1/686C12Q2563/149
Inventor 方文捷洪南陈敏潘炜华廖万清尤其敏俞世冲刘加李娟李颖芳赵海霞吴俊琪孙刚
Owner SECOND MILITARY MEDICAL UNIV OF THE PEOPLES LIBERATION ARMY
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