Polypeptide sequence specifically binding to avian bursal virus vp2 protein and its application

A specific and viral technology, applied in the field of molecular biology, can solve the problems of B-lymphocyte killing in the bursa of Fabricius, decreased immunity of chickens, vaccine immune failure and other problems, and achieve rapid and low-cost detection, rapid artificial synthesis, specific good sex effect

Active Publication Date: 2022-04-22
HENAN ACAD OF AGRI SCI +1
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

Its main feature is that IBDV invades the central immune organ of chicks, the bursa of Fabricius, and IBDV proliferates in a large number in the B lymphocytes of the bursa of Fabricius, causing serious damage to the B lymphocytes of the bursa of Fabricius, resulting in severe immunosuppression, and the immunity of chickens Decline, making vaccine immunity ineffective, bringing great challenges to the poultry breeding industry's disease prevention and control

Method used

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  • Polypeptide sequence specifically binding to avian bursal virus vp2 protein and its application
  • Polypeptide sequence specifically binding to avian bursal virus vp2 protein and its application
  • Polypeptide sequence specifically binding to avian bursal virus vp2 protein and its application

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0023] Example 1 Molecular docking and screening of virtual peptide library

[0024] 1. Preparation of VP2 protein crystal structure

[0025] With the help of computer-aided design software, the amino acid sequence and crystal structure of IBDV VP2 protein were analyzed, and the 8th to 438th amino acid residues were selected as the docking region for molecular docking.

[0026] 2. Design of virtual peptide library

[0027] The present invention adopts the method of extending amino acid residues one by one. First, several amino acid libraries with the highest scores are docked with the structure of the target protein one by one. Until the best docking result is achieved. The peptide sequence generated by the virtual peptide library preferably has 2-9 amino acid residues.

[0028] 3. Evaluation of docking results

[0029] Using molecular docking software, comprehensively evaluate the free energy, hydrogen chain, van der Waals force and other mechanical parameters of peptide-...

Embodiment 2I

[0030] Example 2 Affinity Identification of IBDVL9-15 Sequence and Artificially Expressed VP2 Protein

[0031] 1. The first is the preparation of the VP2 protein chip, using the EDC / NHS method to covalently couple the IBDV VP2 protein (5 μg / mL) to the carboxyl chip of LSPR. When the LSPR Single≥500pm, it indicates that the VP2 protein coupling is successful. The sensor can be used to measure the interaction between IBDV VP2 protein and IBDV L9-15 sequence.

[0032] 2. The second is to run the sensor to obtain a stable signal baseline. Start running PBS buffer (pH 7.4) at the highest flow rate of 150 μL / min until the signal baseline of the sensor reaches a stable level. Then, reduce the flow rate to 20 μL / min and prepare for loading. Sample.

[0033] 3. Use PBS buffer to synthesize the solid phase, and prepare the dry powder of IBDVL9-15 modified by biotinylation at the amino terminal to the set concentration in advance, and then inject 300 μL of IBDVL9-15 solution into the s...

Embodiment 3I

[0035] Example 3 ELISA Identification of IBDVL9-15 Polypeptide and Artificially Expressed IBDV VP2 Protein

[0036] 1. Dilute the purified IBDV VP2 protein with CBS solution (pH9.6) to 10 μg / mL, and add it to an ELISA 96-well plate at a volume of 50 μL / well; express the purified protein from different viruses in the same way, that is, classical swine fever Viral E2 protein (CSFV-E2), porcine circovirus type 2 cap protein (PCV2-cap) and 1% bovine serum albumin (BSA), PBS buffer for ELISA 96-well plate coating, as a control, overnight at 4 °C quilt.

[0037] 2. Before blocking with 1% BSA solution, the ELISA plate was washed 5 times with PBST buffer. For each washing item, the reaction wells of the ELISA plate were filled with PBST, left to stand for 1 min, and then the PBST in the wells was discarded, and repeated 5 times. Subsequently, 1% BSA was added to the reaction wells of the ELSIA plate, placed in a 37° C. incubator, and left to stand for 1 h.

[0038] 3. Use PBS buffer...

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Abstract

The invention relates to a polypeptide sequence specifically combined with avian bursal virus VP2 protein and application thereof, belonging to the field of molecular biology. In the present invention, by means of computer-aided design, on the basis of the crystal structure of avian bursal virus VP2 protein, through molecular docking virtual screening technology, search for the polypeptide ligand with the best binding mode and affinity with the target protein in the virtual polypeptide database, and its polypeptide The sequence is SERWDN, which is IBDVL9‑15. The present invention uses the expressed and purified IBDV VP2 protein to carry out ELISA and localized surface plasmon resonance tests respectively. The results show that the IBDVL9-15 polypeptide can have good binding ability with the IBDV VP2 protein. The polypeptide designed by the present invention can be used in Rapid detection and separation and purification of IBDV VP2 antigen.

Description

technical field [0001] The invention relates to a polypeptide sequence specifically combined with avian bursal virus VP2 protein and application thereof, belonging to the field of molecular biology. Background technique [0002] Based on the three-dimensional structure and charge distribution characteristics of proteins, the use of molecular virtual docking technology to screen affinity peptides has become an important technical means for the rational design of polypeptide ligands and drugs. This method mainly uses the rapid operation of computer software to realize one-by-one docking of small molecular polypeptides on the active site of the target protein. These small molecular polypeptides come from the virtual peptide library prepared in advance, and then continuously optimize the spatial conformation of the target protein. , amino acid residue side chains, etc., to find the optimal binding conformation between the small molecule polypeptide and the target protein, calcul...

Claims

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Application Information

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Patent Type & Authority Patents(China)
IPC IPC(8): C07K7/06G01N33/569
CPCC07K7/06G01N33/56983G01N2333/08
Inventor 刘运超张改平陈玉梅王方雨尚延丽魏蔷冯华刘东民邢广旭邓瑞广
Owner HENAN ACAD OF AGRI SCI
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