Cinnamate-4-hydroxylase gene ThC4H and use thereof
A hydroxylase, cinnamic acid technology, applied in the field of genetic engineering, can solve problems such as relatively few studies at the molecular level
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Embodiment 1 3
[0025] Example 1 Acquisition of the full-length cDNA sequence of A. trifoliate ThC4H gene
[0026] The leaves of fresh plants of Clover were taken, wrapped in tin foil, and quickly frozen with liquid nitrogen, total RNA was extracted, and reverse transcribed into cDNA. Total RNA was extracted according to the instructions of TIANGEN RNAprep Pure Plant Total RNA Extraction Kit (DP441), and its integrity and concentration were detected by 1.0% agarose gel electrophoresis and a nucleic acid concentration detector.
[0027] Reverse transcription of total RNA according to Takara PrimeScript TM II 1st Strand cDNA Synthesis Kit instructions.
[0028] According to the BLAST analysis of the existing transcriptome data and the C4H gene sequence of the same family and genus in NCBI, the sequence with the highest similarity was selected as the target gene sequence, and several pairs of primers were designed with the open reading frame sequence of this sequence as a template. The amplif...
Embodiment 2
[0034] Example 2 Secondary structure and tertiary structure prediction and phylogenetic tree analysis of ThC4H
[0035] Using the online software SOPMA (https: / / npsa-prabi.ibcp.fr / cgi-bin / npsa_automat.pl?page=nps a_sopma.html) to predict the secondary structure of ThC4H protein in the resveratrol biosynthetic pathway, the results Such as figure 2 As shown, the protein is composed of 47.92% α-helix (Alpha helix), 12.87% extended chain (Extended strand), 4.55% β-turn (Beta turn) and 34.65% random coil (Random coil), It shows that the α-helical structure is the backbone of the secondary structure of protein C4H.
[0036]Use the online software SWISS-MODEL (http: / / swissmodel.expasy.org / ) to predict the three-dimensional structure of the ThC4H protein in the resveratrol biosynthetic pathway. The method used is X-ray, and the resolution is The result is as image 3 shown. The template number used is 6vby.1.A, the sequence identity (Seq Identity) is 75.25%, the state of the oli...
Embodiment 3
[0043] Functional verification of embodiment 3 ThC4H gene
[0044] The cDNA sequence of the ThC4H gene and the distribution of restriction sites on the plasmid vector pCMBIA1301 were analyzed, and PCR primers with SmaⅠ and XbaⅠ restriction sites were designed (upstream primer: TCCCCCGGGATGGATCTCATACTCATCG; downstream primer: GCTCTAGATCAAGCTTCTATTGGCTTTG) for the construction of overexpression vector.
[0045] Clover cDNA was used as a template for PCR amplification, and the reaction system was the same as above. After the amplified product was subjected to 1.0% agarose gel electrophoresis, a kit was used to purify and recover the DNA fragment consistent with the target gene. The purified recovered product and the plasmid pCMBIA1301 were subjected to double enzyme digestion at 37°C, followed by agarose gel electrophoresis and then purified and recovered. The digested products after purification and recovery were ligated with T4 DNA ligase and incubated overnight at 16°C. The l...
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