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Buffer solution composition and application thereof

A buffer and composition technology, applied in the field of buffer composition and nucleic acid library construction, can solve the problems of restricting the construction of high-throughput workflow, the limited height of the ligation reaction platform, and the inability to advance the ligation time. The amount of enzyme used in the system, the inhibition effect is small, and the effect of improving efficiency and stability

Pending Publication Date: 2021-06-25
ANNOROAD GENE TECH BEIJING
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  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

The conversion rate is largely affected by the ligation efficiency. The ligation reaction efficiency is related to many factors such as the enzyme reaction efficiency, the openness of the DNA chain end, the collision efficiency of the donor and the acceptor, and the linker in the ligation reaction system will also The effective number of adapters generated in the self-ligating depletion reaction is an efficiency bottleneck in the library construction process
At present, the common rapid connection buffer in the market has a limited connection reaction plateau height, and there are situations such as increasing the amount of enzyme input to overcome the mismatch of the buffer system, which increases the cost of practical application; in addition, the connection time under the existing connection buffer Unable to push forward the enzyme reaction balance; and a large number of mismatches will be generated during the premixing process, which reduces the library yield and limits the construction of high-throughput workflows
[0004] Therefore, the general buffer and connection buffer in the existing library construction need to be improved

Method used

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  • Buffer solution composition and application thereof
  • Buffer solution composition and application thereof
  • Buffer solution composition and application thereof

Examples

Experimental program
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Effect test

Embodiment 1

[0058]In this embodiment, the connection buffer system of the embodiment of the present invention is adopted, and the formula is: 45mM Tris buffer, 3mM divalent cation, 50mM monovalent cation, 5mM dithiothreitol (DTT), 10% PEG4000-8000 and 1.5mM ATP, the pH value is 8, and the influence of the change of reaction conditions on the yield of the library construction results is studied, and the results are as follows:

[0059] Table 5 Connection efficiency statistics at different connection times

[0060]

[0061] As shown in Table 5, the connection efficiency of the connection system of the embodiment of the present invention reaches 77.29% when connected overnight at 6 degrees Celsius, reaching a plateau. When the fixed connection time is ten minutes, the preferred connection temperature is 20 degrees Celsius. And the buffer system shows that the connection efficiency increases with time. The connection reaction temperature is 16-37 degrees Celsius, preferably 16 degrees Ce...

Embodiment 2

[0063] In this example, the buffer combination (universal buffer and ligation buffer) of the embodiment of the present invention, and the commercially available blue universal buffer and quick new ligation buffer are used as universal buffers to construct a DNA library

[0064] Connection efficiency statistics under different systems

[0065]

[0066]

[0067] Among them, the Blue buffer and quick new buffer are provided by Anolun Biological Company.

[0068] Among them, the formula of universal buffer is 10mM Tris-HCl buffer, 10mM MgCl 2 , 50mM KCl, 50mMNaCl, 1% Triton-x-100 and 1mM DTT; the formulation of the ligation buffer is 33-66mM Tris-acetate buffer, 6mMMg 2+ , 5mM dithiothreitol (DTT), 8% PEG6000 and 1mM ATP, the pH value is 8.

[0069] As shown in the table above, when the ligation reaction is carried out for 10 minutes, the ligation efficiency is twice that of the 0.5×blue+1×rapidligation buffer system. When the ligation reaction is carried out overnight at...

Embodiment 3

[0071] The buffer solution of the embodiment of the present invention in Example 2 was used in the link of NGS sequencing library construction for tumor drugs, and real ctDNA samples were used to compare the buffer solution of the embodiment of the present invention with the KAPA hyper reagent.

[0072] The buffer solution of Example 2 of the present invention and KAPA hyper reagent were used to construct libraries for two groups of ctDNA samples according to the aforementioned method for library construction. Each group started with 10 ng of samples and had 8 PCR cycles. The 6-component library using the buffer of Example 2 of the present invention has a high concentration. The buffer solution in Example 2 showed a higher library yield than the KAPA hyper reagent, indicating that the buffer solution in Example 2 increased the fragment conversion rate while reducing the reaction time, which was beneficial to the detection of low-frequency mutations in ctDNA samples.

[0073] T...

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Abstract

The invention discloses a buffer solution composition and application thereof. The buffer solution composition comprises: a general buffer solution, wherein the general buffer solution comprises 5-25 mMol of a general Tris buffer solution, 5-20 mMol of general divalent cations, 75-150 mMol of general monovalent cations, 0.05-2% by mass of a surfactant and 0.5-2 mMol of dithiothreitol (DTT), and the pH value of the general buffer solution is 8-10; and a connection buffer solution, which comprises 33 to 66 mM of a connection Tris buffer solution, 0.5 to 5 mM of connection divalent cations, 0.5 to 10 mM of dithiothreitol (DTT), 5 to 15% of PEG-4000 to PEG-8000 and 0.5 to 2 mM of ATP and has a pH value of 7 to 9. Therefore, the buffer solution composition can be used for library construction of multiple samples, and is short in reaction time, high in conversion rate and low in mismatch rate.

Description

technical field [0001] The present invention relates to the field of biotechnology, in particular, to a buffer composition and its application, more specifically, to a buffer composition, a kit, and a method for constructing a nucleic acid library. Background technique [0002] Next-generation sequencing of genomic DNA and corresponding bioinformatics analysis have been widely used in the fields of medical health and scientific and technological services. [0003] The general process for the construction of a next-generation sequencing library is as follows: fragment the target DNA; blunt the fragmented DNA; protrude adenylation at the 3' end of the blunt DNA; The DNA fragments are ligated with double-stranded Y adapters that highlight thymine. The existing buffer system has poor sample compatibility and is also difficult to be compatible with different library construction steps. Frequent buffer replacement is required, which prolongs the time for library construction, and...

Claims

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Application Information

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IPC IPC(8): C40B50/06
CPCC40B50/06Y02A50/30
Inventor 潘伟业彭琼芳陈雪程世月王亚蕾李志民李大为玄兆伶王海良王娟
Owner ANNOROAD GENE TECH BEIJING
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