The invention relates to the technical field of gas heating water heaters and aims to provide a method and a system for testing comprehensive performance of a gas heating water heater. According to the technical scheme, the method comprises the following specific steps: S1, setting initial conditions of equipment to be tested and operating the equipment to be tested according to testing requirements; S2, carrying out an automatic water supplementing operation and turning off the automatic water supplementing operation until the water is supplemented fully; S3, automatically detecting parameters through the system, debugging voltage ranges of a wall-hung boiler and a water heater, and switching on a power supply of the equipment to be tested; S4, setting initial conditions and selecting testing items in a testing item list according to a priority principle; S5, marking testing time, testing equipment number and testing results of tested data; S6, stopping testing if the number of unqualified testing results in obtained/recorded testing results; or continuing to test; S7, saving testing data after completing testing; and S8, inquiring and deriving data information according to the testing time, the testing equipment number and the testing results.