BVDV (bovine viral diarrhea virus) internal control typing fluorescent PCR (polymerase chain reaction) detection kit and preparation thereof
A technology of bovine viral diarrhea and detection kit, which is applied in the directions of fluorescence/phosphorescence, material excitation analysis, microbe determination/inspection, etc., to achieve the effect of high detection sensitivity, good sensitivity and short detection time
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Embodiment 1
[0045] Example 1: Preparation of Template and Construction of Positive Recombinant Plasmid
[0046] 1. Design and synthesis of primers and probes
[0047] The primer information of the present invention is shown in Table 1. Among them, referring to the 5′-UTR conserved region of BVDV I with the accession number M31182.1 and the BVDV II with the accession number AY149216.1 in GenBank, and the mRNA conserved region of bovine GAPDH with the accession number NM001034034.2, a pair of specificity was designed for each Primers, the lengths of the amplified target fragments are 127bp, 169bp, and 152bp respectively. For details, see the attached gene sequence list.
[0048] Table 1 Design results of fluorescent PCR primers for internal standard typing
[0049]
[0050] 2. Preparation of template RNA and construction of positive recombinant plasmid
[0051] Whole blood, serum, tissue, and anal swab samples were extracted with Trizol conventional reagents; milk was centrifuged at ...
Embodiment 2
[0060] Example 2: Establishment of an internal standard typing fluorescent PCR amplification system
[0061] Single-plex conditions were optimized in a two-step method. In the first step, the concentrations of primers BR1, BR2, and GR were 0.6 μM, 0.75 μM, and 0.4 μM, respectively, and the RNA template was 10 μL. The above reactions were performed in a water bath at 70°C for 10 minutes, and placed on ice for 2 minutes. Solution 6μL, add 50uM-MLV and 10u RNase inhibitor, add dNTPs to a final concentration of 0.5mM, make up to 10μL with deionized water, incubate at 42°C for 1h, and complete the cDNA preparation; the second step, 20μL system, take the cDNA2 obtained in the first step -5 μL, the final concentrations of the upstream and downstream primers of BVDV I, BVDV II and GAPDH are 0.05 μM, 0.1 μM, 0.15 μM, 0.2 μM, 0.25 μM, 0.3 μM, 0.35 μM and 0.4 μM for optimization, 2×SYBR Premix Dimer Eraser 10 μL, the fluorescent quantitative PCR reaction program was: pre-denaturation at ...
Embodiment 3
[0065] Embodiment three: Specific detection
[0066] The kit constructed in Example 1 respectively amplified positive nucleic acid samples such as BVDV I, BVDV II, FMDV, BTV, BDV, CSFV, etc. Except for the amplification of BVDV I, BVDV II and GAPDH, the rest of the tested samples were all negative , indicating that the method has good specificity, see attached figure 2 .
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