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Bim (Bcl-2 interacting mediator of cell death) gene deletion fluorescent quantitative PCR (polymerase chain reaction) detection primer, probe and detection reagent kit

A technology of fluorescence quantification and gene deletion, which is applied in the field of molecular biology, can solve the problems of pollution, inability to quantify and amplify products, etc., and achieve the effect of simplifying experiments, excellent accuracy, and improving the difference of TM value

Pending Publication Date: 2016-05-25
ANHUI DAJIAN MEDICAL TECH CO LTD
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0010] The present invention is based on the fluorescent quantitative PCR method. The real-time fluorescent quantitative PCR combines nucleic acid amplification, hybridization, spectral analysis and real-time detection technologies, and detects PCR products by means of fluorescent signals, which solves the problem that traditional PCR technology cannot quantify and amplifies product pollution. Problems, avoiding the pollution in the process of ordinary quantitative PCR operation, making it easy to operate, fast, and accurate results, has become a powerful tool for gene expression quantification, with high sensitivity and specificity, good repeatability and wide quantitative range, etc. features

Method used

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  • Bim (Bcl-2 interacting mediator of cell death) gene deletion fluorescent quantitative PCR (polymerase chain reaction) detection primer, probe and detection reagent kit
  • Bim (Bcl-2 interacting mediator of cell death) gene deletion fluorescent quantitative PCR (polymerase chain reaction) detection primer, probe and detection reagent kit
  • Bim (Bcl-2 interacting mediator of cell death) gene deletion fluorescent quantitative PCR (polymerase chain reaction) detection primer, probe and detection reagent kit

Examples

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Embodiment 1

[0044] Example 1 Design and screening of fluorescent quantitative PCR detection primers and probes for Bim gene deletion

[0045] According to the design factors of conventional fluorescent quantitative PCR primers, 20 sets of forward primers, reverse primers and fluorescent probes were designed. According to the design principles of primer screening, three groups with relatively high scores were screened. Some primers and probe sequences are shown in Table 1. Primer design factors include: 1. The primers are designed in the conserved region of the nucleic acid and have specificity; 2. The amplified product avoids the formation of secondary structures (free energy is less than 58.61KJ / mol); 3. The length of the primer is generally 17-25 bases 4. The G+C content is between 40% and 60%, and 45-55% is the best; 5. The bases should be randomly distributed and as uniform as possible; 6. The primers themselves should not have Complementary of 4 consecutive bases; 7. There can be no ...

Embodiment 2

[0049] Example 2 Detection of Bim gene deletion samples

[0050] The positive samples used in this embodiment were collected from the paraffin block tissues diagnosed as Bim gene deletion by clinical pathology in the Department of Pathology, Cancer Hospital Affiliated to Sun Yat-sen University, and the negative samples were wild homozygous (BIM not deleted) individual paraffin tissue tissues, of which 83 were positive samples, There were 9 cases of negative samples. Genomic DNA was extracted from the wax blocks for the following experimental applications.

[0051] Probes and primers are:

[0052] ForwardPrimer: 5'-CAACAAACCCATCAGAACAGACAC-3',

[0053] ReversePrimer: 5'-ACAGCCTCTATGGAGAACAGTGATT-3',

[0054] Taqman-Probe: 5'-FAM-CAGACACTGGAACAAA-MGB-3';

[0055]Then optimize the reaction system for the detection of FQ-PCR: the reaction system is 25 μL, each 0.2 μL (20 μM) of forward and reverse primers, each 0.2 μL (20 μM) of the probe, 2 μL (100-300 ng / μl) of sample templa...

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Abstract

The invention discloses a Bim (Bcl-2 interacting mediator of cell death) gene deletion fluorescent quantitative PCR (polymerase chain reaction) detection primer, a probe and a detection reagent kit, and belongs to the field of molecular biological detection. The Bim gene deletion fluorescent quantitative PCR detection primer and the probe comprise forward primers 5'-CAACAAACCCATCAGAACAGACAC-3', reverse primers 5'-ACAGCCTCTATGGAGAACAGTGATT-3 and fluorescent probes 5'-FAM-CAGACACTGGAACAAA-MGB-3'. The detection reagent kit comprises the Bim gene deletion fluorescent quantitative PCR detection primer, the probe, premixed liquid of PCR liquid and positive control samples A. The Bim gene deletion fluorescent quantitative PCR detection primer, the probe and the detection reagent kit have the advantages that Bim gene deletion mutation can be detected by the aid of the Bim gene deletion fluorescent quantitative PCR detection primer, the probe and the detection reagent kit, and the Bim gene deletion fluorescent quantitative PCR detection primer, the probe and the detection reagent kit are simple, convenient and feasible and are high in accuracy and sensitivity and particularly suitable for detecting clinical samples; Bim deletion mutation can be detected, and accordingly the Bim gene deletion fluorescent quantitative PCR detection primer, the probe and the detection reagent kit can bring convenience for guiding individual treatment on bodies.

Description

technical field [0001] The invention belongs to the field of molecular biology, and in particular relates to a fluorescent quantitative PCR detection primer, a probe and a detection kit for Bim gene deletion. Background technique [0002] At present, lung cancer has the highest mortality rate among malignant tumors in developed countries such as Europe and the United States, and its incidence rate is increasing year by year, of which NSCLC accounts for 80% to 85%. In recent years, significant progress has been made in the targeted therapy of lung cancer. Many types of targeted drugs with high efficiency and low toxicity have come out one after another and have been applied in clinical practice, mainly including targeted therapy targeting EGFR and targeting angiogenesis. Targeted therapy, matrix metalloproteinase inhibitor (TIMP), targeted therapy targeting farkinyl transferase, antisense oligonucleotide targeted therapy for lung cancer and targeted vaccine for lung cancer, e...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/68C12N15/11
CPCC12Q1/6886C12Q1/6851C12Q2600/158C12Q2531/113C12Q2545/113C12Q2561/101
Inventor 钟明李香梅
Owner ANHUI DAJIAN MEDICAL TECH CO LTD
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