Bim (Bcl-2 interacting mediator of cell death) gene deletion fluorescent quantitative PCR (polymerase chain reaction) detection primer, probe and detection reagent kit
A technology of fluorescence quantification and gene deletion, which is applied in the field of molecular biology, can solve the problems of pollution, inability to quantify and amplify products, etc., and achieve the effect of simplifying experiments, excellent accuracy, and improving the difference of TM value
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Embodiment 1
[0044] Example 1 Design and screening of fluorescent quantitative PCR detection primers and probes for Bim gene deletion
[0045] According to the design factors of conventional fluorescent quantitative PCR primers, 20 sets of forward primers, reverse primers and fluorescent probes were designed. According to the design principles of primer screening, three groups with relatively high scores were screened. Some primers and probe sequences are shown in Table 1. Primer design factors include: 1. The primers are designed in the conserved region of the nucleic acid and have specificity; 2. The amplified product avoids the formation of secondary structures (free energy is less than 58.61KJ / mol); 3. The length of the primer is generally 17-25 bases 4. The G+C content is between 40% and 60%, and 45-55% is the best; 5. The bases should be randomly distributed and as uniform as possible; 6. The primers themselves should not have Complementary of 4 consecutive bases; 7. There can be no ...
Embodiment 2
[0049] Example 2 Detection of Bim gene deletion samples
[0050] The positive samples used in this embodiment were collected from the paraffin block tissues diagnosed as Bim gene deletion by clinical pathology in the Department of Pathology, Cancer Hospital Affiliated to Sun Yat-sen University, and the negative samples were wild homozygous (BIM not deleted) individual paraffin tissue tissues, of which 83 were positive samples, There were 9 cases of negative samples. Genomic DNA was extracted from the wax blocks for the following experimental applications.
[0051] Probes and primers are:
[0052] ForwardPrimer: 5'-CAACAAACCCATCAGAACAGACAC-3',
[0053] ReversePrimer: 5'-ACAGCCTCTATGGAGAACAGTGATT-3',
[0054] Taqman-Probe: 5'-FAM-CAGACACTGGAACAAA-MGB-3';
[0055]Then optimize the reaction system for the detection of FQ-PCR: the reaction system is 25 μL, each 0.2 μL (20 μM) of forward and reverse primers, each 0.2 μL (20 μM) of the probe, 2 μL (100-300 ng / μl) of sample templa...
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