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Capture probe set and kit for detecting human mitochondrial genes

A mitochondrial gene and mitochondrial technology, applied in the field of gene detection and molecular genetics, can solve the problems of limited detection sensitivity, low positive rate and high sequencing background, and achieve the effects of improving detection specificity, saving costs and high sensitivity

Inactive Publication Date: 2016-07-20
北京迈基诺基因科技股份有限公司
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

Direct sequencing is so far the gold standard for mutation analysis. At present, only a few common mitochondrial gene loci can be selected for mutation and deletion screening. The positive rate is very low, and most of them are difficult to obtain accurate detection results. In addition, these loci Most of them are based on the experimental data of other races, and the gene mutation sites of Chinese and Europeans may be very different. Therefore, the existing methods have great limitations
Cannot fully meet the current diagnostic needs of mitochondrial gene mutations
Although the traditional Sanger sequencing method can realize the analysis of the whole mitochondrial DNA gene sequence for the detection and analysis of mitochondrial gene mutations, the cost of Sanger sequencing is high, the sequencing background is high, the detection sensitivity is limited, and it cannot process a large number of samples at the same time , so it cannot be applied on a large scale in clinical diagnosis

Method used

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  • Capture probe set and kit for detecting human mitochondrial genes
  • Capture probe set and kit for detecting human mitochondrial genes
  • Capture probe set and kit for detecting human mitochondrial genes

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0023] Embodiment 1: Design and preparation of the probe set of the present invention

[0024] According to the complete human mitochondrial gene sequence, see the appendix. A 78bp probe sequence was designed for the non-repetitive region in each region, and each sequence was shifted along the gene position, and the shift size between the probes was 3bp. Using in situ synthesis technology, a large number of designed probes (MyGenostics.US) were synthesized, and a large number of probes with biological markers were amplified by PCR method, which became the mtDNA whole gene capture probe set.

[0025] Described PCR method is specifically:

[0026] Mix the probes synthesized above evenly in a total volume of 1.2 ml of dH 2 In O, take 15 μl of them and use general PCR primers (the sequence at the 5' end is GACTACATGGGACAT, and the sequence at the 3' end is GGAACCTACGACGTA), and divide into three tubes for PCR amplification, wherein the primer GACTACATGGGACAT is a primer labeled ...

Embodiment 2

[0030] Embodiment 2: Composition, preparation and use of the kit of the present invention

[0031] The detection kit for human mitochondrial whole genome sequence described in this embodiment is a kit for molecular genetic detection by detecting mutations in the whole mitochondrial genome.

[0032] The components contained in the kit are: the probe set obtained in Example 1, buffer HY, buffer BL, library enrichment binding buffer, washing buffer WB1, washing buffer WB3, buffer NE, PCR reaction Liquid, product purification eluent. The specific composition is:

[0033]

[0034]

[0035] The using method of described test kit is:

[0036] 1. Sample library preparation:

[0037] (1) Ultrasonic fragmentation: the initial amount is 3 μg, diluted to 30 ng / μL with 1×lowTEBuffer. CovarisS2 ultrasonic instrument was used for ultrasonic fragmentation, and the value of Covaris system was set according to the standard, 6 cycles×60s, water bath temperature: 5°C, duty cycle: 20%, i...

Embodiment 3

[0094] Embodiment 3: verification of the use effect of the kit of the present invention

[0095] The kit invented this time is the only one in China for mitochondrial whole genome capture. Compared with similar foreign kits, the cost is lower, and the detection limit of mutations can reach 0.01%. This invention and the kit used can perform genetic diagnosis on the whole mitochondrial gene, and as a result, 100% coverage of the whole mitochondrial genome has been achieved in each case. Accurately detect mutation deletion and duplication, and the results are completely consistent with the clinical response.

[0096] Using the kit of the present invention to detect 4 cases of mitochondrial gene variation samples and normal samples, signed a written informed consent. The results confirmed that more than 50% of the original short sequences can be compared back to the reference sequence of the target region, the average effective sequencing data volume of the target region reaches ...

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Abstract

The invention provides a probe set and kit for detecting human mitochondrial genes. The probe set covers sequences of human mitochondrial genome, and the sequences of the probe are SEQ ID No: 1-213. Genetic mutation information of mitochondrial DNA such as amplification, deficiency and mutation can be detected at a time in connection with gene capture sequencing technology being awarded with a patent application approval, multiple samples can be treated at same time, and the probe set and kit have the advantages of low time consumption, low cost and high specificity, and sequencing effect can be improved significantly. The invention also provides a kit for detecting human mitochondrial genome, the kit comprises capture probes and related reagents to detect mitochondrial genome; the use of the capture probe set and kit can provide basis for taking correct and reasonable interventions as soon as possible, and the development tendency of precision medical treatment is satisfied.

Description

technical field [0001] The invention belongs to the fields of gene detection and molecular genetics, and specifically relates to a probe group and a kit for capturing and sequencing human mitochondrial genes. Background technique [0002] Mitochondria are a fundamental and important organelle present in most eukaryotic cells. It is the place where cells undergo oxidative phosphorylation, and participates in energy metabolism, cell apoptosis, maintenance of intracellular calcium and iron ion balance and signal transduction of other life activities. The full length of human mitochondrial DNA (mtDNA) is 16596bp. It is a very compact circular double-stranded DNA. The outer ring is a heavy chain (H), and the inner ring is a light chain (L). Except for one, it is actually related to DNA replication. Outside the 87bp D loop, other genes have no introns. mtDNA contains a total of 37 genes, of which 22 encode transfer ribonucleic acid (tRNA), 2 encode ribosomal ribonucleic acid (12...

Claims

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Application Information

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IPC IPC(8): C12Q1/68C12N15/11
CPCC12Q1/6827C12Q1/6869
Inventor 伍建林朋
Owner 北京迈基诺基因科技股份有限公司
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