Capture probe set and kit for detecting human mitochondrial genes
A mitochondrial gene and mitochondrial technology, applied in the field of gene detection and molecular genetics, can solve the problems of limited detection sensitivity, low positive rate and high sequencing background, and achieve the effects of improving detection specificity, saving costs and high sensitivity
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Embodiment 1
[0023] Embodiment 1: Design and preparation of the probe set of the present invention
[0024] According to the complete human mitochondrial gene sequence, see the appendix. A 78bp probe sequence was designed for the non-repetitive region in each region, and each sequence was shifted along the gene position, and the shift size between the probes was 3bp. Using in situ synthesis technology, a large number of designed probes (MyGenostics.US) were synthesized, and a large number of probes with biological markers were amplified by PCR method, which became the mtDNA whole gene capture probe set.
[0025] Described PCR method is specifically:
[0026] Mix the probes synthesized above evenly in a total volume of 1.2 ml of dH 2 In O, take 15 μl of them and use general PCR primers (the sequence at the 5' end is GACTACATGGGACAT, and the sequence at the 3' end is GGAACCTACGACGTA), and divide into three tubes for PCR amplification, wherein the primer GACTACATGGGACAT is a primer labeled ...
Embodiment 2
[0030] Embodiment 2: Composition, preparation and use of the kit of the present invention
[0031] The detection kit for human mitochondrial whole genome sequence described in this embodiment is a kit for molecular genetic detection by detecting mutations in the whole mitochondrial genome.
[0032] The components contained in the kit are: the probe set obtained in Example 1, buffer HY, buffer BL, library enrichment binding buffer, washing buffer WB1, washing buffer WB3, buffer NE, PCR reaction Liquid, product purification eluent. The specific composition is:
[0033]
[0034]
[0035] The using method of described test kit is:
[0036] 1. Sample library preparation:
[0037] (1) Ultrasonic fragmentation: the initial amount is 3 μg, diluted to 30 ng / μL with 1×lowTEBuffer. CovarisS2 ultrasonic instrument was used for ultrasonic fragmentation, and the value of Covaris system was set according to the standard, 6 cycles×60s, water bath temperature: 5°C, duty cycle: 20%, i...
Embodiment 3
[0094] Embodiment 3: verification of the use effect of the kit of the present invention
[0095] The kit invented this time is the only one in China for mitochondrial whole genome capture. Compared with similar foreign kits, the cost is lower, and the detection limit of mutations can reach 0.01%. This invention and the kit used can perform genetic diagnosis on the whole mitochondrial gene, and as a result, 100% coverage of the whole mitochondrial genome has been achieved in each case. Accurately detect mutation deletion and duplication, and the results are completely consistent with the clinical response.
[0096] Using the kit of the present invention to detect 4 cases of mitochondrial gene variation samples and normal samples, signed a written informed consent. The results confirmed that more than 50% of the original short sequences can be compared back to the reference sequence of the target region, the average effective sequencing data volume of the target region reaches ...
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