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A method and kit for detecting genetic information of genes related to folic acid metabolism

A technology of folic acid metabolism and genotyping, which is applied in biochemical equipment and methods, microbial measurement/inspection, DNA/RNA fragments, etc. It can solve problems such as inability to judge cutting, interference result judgment, and inability to correctly type, etc., to reduce The effect of detection cost, low detection cost and accuracy guarantee

Active Publication Date: 2021-11-30
GUANGDONG PHARMA UNIV
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

In addition, the primer design of the above literature has certain disadvantages. Among them, the PCR products amplified by the primers at the MTHFR C677T and MTRR A66G sites will be digested by enzymes, which may lead to genotype misjudgment. See the analysis in the above table
However, the MTHFR A1298C site selection restriction endonuclease MboII cannot be typed correctly at all, because when the allele is A, GAAGA【 figure 2 , 16681-16685 bases] is the recognition site of MboII, TCTTC not far downstream of the polymorphic site [ figure 2 , 16700-16704 bases] is also the recognition site of MboII, the two cleavage sites are only separated by one base, it is impossible to judge whether the cleavage is caused by GAAGA or TCTTC, that is, the TCTTC sequence will seriously interfere with the judgment of the result
Nevertheless, many researchers choose MboII to type the MTHFR A1298C site. Although the size of the PCR product is somewhat different, the interference of the TCTTC sequence near the polymorphic site cannot be avoided.

Method used

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  • A method and kit for detecting genetic information of genes related to folic acid metabolism
  • A method and kit for detecting genetic information of genes related to folic acid metabolism
  • A method and kit for detecting genetic information of genes related to folic acid metabolism

Examples

Experimental program
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Effect test

Embodiment 1

[0081] This example aims to use the same enzyme, namely HinfI, to identify two polymorphic sites of the MTHFR gene in the same system, that is, the rs1801133 site [for related sequence data, see figure 1 ], rs1801131 locus [for related sequence data, see figure 2 】. The rs1801133 site of the MTHFR gene in the GenBankdbSNP database and its related sequences are shown in SEQ ID NO: 23, Y is the base of the polymorphic site, Y=C or T, wherein C is the wild-type allele, T is the mutant type, etc. alleles, see https: / / www.ncbi.nlm.nih.gov / projects / SNP / snp_ref.cgi? rs=1801133. MTHFR gene rs1801131 site and related sequences such as SEQ ID NO: 24, M is the base of the polymorphic site, M=A or C, A is the wild-type allele, C is the mutant allele, see https: / / www.ncbi.nlm.nih.gov / projects / SNP / snp_ref.cgi? rs=1801131.

[0082] Using oral epithelial cells as a template, in the same system, two pairs of primers (outer primers F1, R1, targeting rs1801133 locus) and (outer primers F3...

Embodiment 2

[0114] The purpose of this embodiment is to establish a method for identifying the rs1801394 site of the MTRR gene using HinfI (for related sequence data, see image 3 ) method, the PCR product used for enzyme cleavage typing must not only have polymorphic site recognition sequences, but also have enzyme cleavage internal control sequences (introduced by creating enzyme cleavage site PCR). The rs1801394 site of the MTRR gene in the GenBank dbSNP database and its related sequences such as SEQ ID NO: 25, R is the base of the polymorphic site, M=A or G, where A is the wild-type allele, and G is the mutant allele Gene, see https: / / www.ncbi.nlm.nih.gov / projects / SNP / snp_ref.cgi? rs=1801394.

[0115] Oral epithelial cells were used as templates, and the outer primers F5 (SEQ ID NO: 9) and R5 (SEQ ID NO: 10) were used in the same system to perform the first round of PCR, and then the PCR products of the first round were used as templates in the same system. In the second round of PC...

Embodiment 3

[0137] In this example, on the basis of Example 1 and Example 2, a HinfI can be used to simultaneously identify three sites of MTHFR gene rs1801133 site [C677T], rs1801131 site [A1298C] and MTRR gene rs1801394 site [A66G] In the method, the PCR product of each site must not only have the polymorphic site recognition sequence, but also have the enzyme digestion internal control sequence. It uses oral epithelial cells as a template, and uses 3 pairs of outer primers (F1, R1, targeting rs1801133) + (F3, R3, targeting rs1801131) + (F5, R5, targeting rs1801394) in the same system. In the first round of PCR, use the first round of PCR products as templates, and use the inner primers (F2, R2, for the rs1801133 site) + (F4, R4, for the rs1801131 site) + (F6, R6, for the rs1801131 site) in the same system. rs1801394 site) for the second round of PCR, the second round of PCR products were digested with HinfI, and the genotype was determined after electrophoresis of the digested products...

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Abstract

The invention discloses a method and a kit for detecting the genetic information of genes related to folic acid metabolism, involving three sites of MTHFR gene rs1801133, rs1801131 and MTRR gene rs1801394. The present invention comprehensively uses techniques such as direct PCR, nested PCR, multiplex PCR, enzyme cutting site PCR and PCR‑RFLP, and directly uses cells to perform two rounds of PCR amplification without extracting DNA. The second round of PCR products can be quickly digested and typed with the cheap restriction endonuclease HinfI. According to actual needs, three sites can be detected in the same tube at one time, and two sites can be detected in the same tube at one time. , and any one of them can be detected separately. All PCR products have enzyme digestion internal control sequences as the quality control of enzyme digestion to ensure the accuracy of the result judgment. The whole process is easy to operate, low in cost, and highly guaranteed in accuracy.

Description

technical field [0001] The invention belongs to the field of molecular detection, and in particular relates to a method and a kit for detecting the genotypes of the rs1801133 site [C677T], rs1801131 site [A1298C] and MTRR gene rs1801394 site [A66G] of the folic acid metabolic pathway MTHFR gene. Background technique [0002] Folic acid is an essential element for the synthesis of nucleic acid, an essential substance for cell growth and tissue repair, and an indispensable nutrient for embryonic development. 5,10-Methylenetetrahydrofolate reductase (MTHFR) and methionine synthase reductase (MTRR) are the two most important enzymes involved in folic acid metabolism, [0003] A large number of studies in recent years have confirmed that folic acid deficiency is the main cause of birth defects such as Down syndrome, cleft lip and palate, and neural tube defects. In addition to preventing fetal neural tube defects, the clinical function of folic acid can also reduce the incidence...

Claims

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Application Information

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Patent Type & Authority Patents(China)
IPC IPC(8): C12Q1/683C12Q1/6883C12N15/11
CPCC12Q1/683C12Q1/6883C12Q2600/156C12Q2549/119C12Q2531/113
Inventor 何震宇王润杰谭秋倩
Owner GUANGDONG PHARMA UNIV
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