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Buffer solution for nucleic acid amplification colorimetric reaction and application thereof

A colorimetric reaction and buffer technology, applied in the buffer field, can solve the problem of inconspicuous discoloration results, and achieve the effect of efficient visual detection

Active Publication Date: 2020-05-22
青岛简码基因科技有限公司
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

However, in many current studies, the buffer used in colorimetric techniques relies on Tris buffer, and the discoloration results during actual operation are not obvious. Therefore, research on a reaction system suitable for amplification and colorimetric techniques is urgently needed.

Method used

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  • Buffer solution for nucleic acid amplification colorimetric reaction and application thereof
  • Buffer solution for nucleic acid amplification colorimetric reaction and application thereof
  • Buffer solution for nucleic acid amplification colorimetric reaction and application thereof

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0058] Embodiment one, buffer solution and amino acid titration curve

[0059] Buffers are formulated from the following reagents:

[0060] Potassium chloride 50mM

[0061] Ammonium sulfate 10mM

[0062] Magnesium Sulfate Heptahydrate 2mM

[0063] Tween-20 0.1% (volume fraction)

[0064] Glycine 2mM.

[0065] To the buffer solution with an initial pH value of 9.74, 50 μL of 1M hydrochloric acid was added dropwise each time, the pH change of each buffer solution was observed, and a titration curve was drawn. from figure 1 It can be seen that in the range of pH 8.86-3.26, adding a small amount of acid can cause a drastic change in pH.

Embodiment 2

[0066] Embodiment two, the colorimetric detection of SEA reaction

[0067] The buffer solution of the present invention is combined with the SEA amplification technology to verify whether the colorimetric detection of the target by the SEA technology can be realized.

[0068] 1. Colorimetric reaction system:

[0069] Buffer: according to the buffer in Example 1 of the present invention (the pH value in the reaction system is 8.80);

[0070] dNTPs: (10mM): 0.8μL;

[0071] Primer P1 (sequence is 5'-GTCATTGGAAACTGGAAGACTG-3'(SEQ ID No.2)): 10 -6 m

[0072] Primer P2 (sequence is 5'-CCACTCTCCTCTTCTGCAC-3'(SEQ ID No.3)): 10 -6 m

[0073] Bst 2.0 Warm Start TM DNApolymerase (8U / μL): 0.1μL;

[0074] Neutral red dye: 100μM;

[0075] The positive control in the reaction system contained 1 μL of Listeria monocytogenes genomic DNA (5'-GTCATTGGAAACTGGAGACTGGAGTGCAGAAGAGGAGAGTGG-3' (SEQ ID No.1)) and RNA target, while water was used as the target nucleic acid (NTC) as a blank cont...

Embodiment 3

[0078] Embodiment three, the optimization of buffer solution pH

[0079] Due to the nature of the buffer, the trace amount of H generated during the amplification reaction + The pH of the reaction solution can be changed suddenly, thereby affecting the color change of the acid indicator. Therefore, the pH value of the initial reaction system has a great influence on the judgment of the results before and after the reaction. In order to obtain the best results, the buffer solution of the present invention is set to different initial pHs, respectively: 8.80, 8.60, 8.40, 8.20, 8.00. With dNTPs (0.8mM), primer P1 (SEQ ID No.2), P2 (SEQ ID No.3) (10 -6 M), Bst 2.0 WarmStart TM DNA polymerase (0.8U), neutral red dye (100μM) mixed to target Listeria monocytogenes genomic DNA and RNA. At the same time, water was used as the target nucleic acid (NTC) as a blank control. Finally, 10 μL of the reaction system was made up with water.

[0080] from image 3 It can be seen from the ...

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Abstract

The invention discloses a buffer solution for nucleic acid amplification colorimetric reaction and application thereof. The buffer solution for the nucleic acid amplification colorimetric reaction comprises the following components in concentration: 0.5-10 mM of a weakly acidic substance, and 0.5-10 mM of a divalent cation salt. The buffer solution is applied to preparation of a nucleic acid amplification colorimetric reaction system and / or nucleic acid amplification fluorescence detection. The nucleic acid amplification colorimetric reaction system comprises one or more pairs of oligonucleotide primers of target nucleic acid for amplification, one or more DNA polymerases, the buffer solution for colorimetric reaction, and dNTPs. When being applied, the buffer solution can promote amplification reaction, can more efficiently realize the visual detection of nucleic acid amplification in a shorter time, and can be used for realizing fluorescence detection and colorimetric detection.

Description

technical field [0001] The invention relates to a buffer solution for nucleic acid amplification colorimetric reaction and application thereof, belonging to the field of biotechnology. Background technique [0002] Many detection methods for nucleic acid sequences and nucleic acid biological signals have been developed, including fluorescence techniques. Amplify the nucleic acid sequence in the sample by designing DNA primers, such as polymerase chain reaction (PCR), loop-mediated isothermal amplification (LAMP), etc. The amplification products amplified by these methods are qualitatively and quantitatively determined by fluorescent techniques such as molecular probes or embedded fluorescent molecules. However, these techniques require complex instrumentation, including optical components, an excitation source, and one or more sensors for fluorescence emission detection. Such devices are usually large, bulky and expensive. After subsequent development, lateral flow chroma...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/6876C12Q1/6844
CPCC12Q1/6876C12Q1/6844C12Q2527/125C12Q2563/107C07H21/00C12Q1/68C07H21/04Y02A50/30
Inventor 石超马翠萍王雪娇姬艳丽
Owner 青岛简码基因科技有限公司