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Rice bacterial leaf blight resistant protein, and coding gene and application thereof

A technology for rice bacterial blight and bacterial blight resistance, which can be applied in application, genetic engineering, plant genetic improvement and other directions, and can solve the problems of inability to analyze and predict candidate genes.

Active Publication Date: 2020-09-15
PLANT PROTECTION RES INST OF GUANGDONG ACADEMY OF AGRI SCI
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

Hopkins et al. showed that Xa7 is a dominant resistance gene directly corresponding to an avirulence gene family [Hopkins et al., 1992, Identification of a family of avirulence genes from Xanthomonasoryzae pv.oryzae. Mol Plant Microbe Interact, 5:451- 459.], Kaji and Ogawa located the gene marker at the 107.5cM position of the RGP map of chromosome 6, and the recombination rate with the G1091 marker was 8% [Kaji R and Ogawa T. Identification of the located chromosome of the resistance gene, Xa-7 ,to bacterial leaf blight in rice.Breed.Sci.,1995,45(Suppl.1):79.], Porter et al. carried out fine positioning on Xa7, but because the rice genome sequencing was not perfect at that time, the target gene region could not be Candidate genes for analysis and prediction [Porter et al., 2003, Development and mapping of markers linked to the rice bacterial blight resistance gene Xa7. Crop Science, 43:1484-1493.]

Method used

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  • Rice bacterial leaf blight resistant protein, and coding gene and application thereof
  • Rice bacterial leaf blight resistant protein, and coding gene and application thereof
  • Rice bacterial leaf blight resistant protein, and coding gene and application thereof

Examples

Experimental program
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Effect test

Embodiment 1

[0028] The isolation clone of embodiment 1Xa7 gene

[0029] On the basis of the previous research of the present invention, it was found that the genome sequence near the Xa7 gene locus is quite different from the common rice reference genomes Nipponbare, 9311, Minghui 63 and Zhenshan 97. Defining the genome sequence of this region is the prerequisite for the cloning of this gene. The present invention constructs the genome BAC library of IRBB7, an Xa7-resistant variety, screens the library with closely linked molecular markers on both sides of Xa7, catches positive clones, and sequences the inserts of the positive clones, thereby obtaining a complete and accurate genome sequence of the region.

[0030] The rice variety IRBB7 has been disclosed in the document "Ogawa et al., 1991, Breeding of near-isogenic lines of rice with single genes for resistance to bacterial blight pathogen Xanthomonas campestris pv. oryzae. Japan J Breed, 41:523-529.").

[0031] The plant material for...

Embodiment 2

[0041] The sequence structure and expression characteristics of embodiment 2Xa7 gene

[0042] Sequence structure analysis of the Xa7 gene: total RNA was extracted from the near-isogenic line IRBB7 carrying the Xa7 gene, via Invitrogen TM GeneRacer TM Kit amplifies the full-length 5' and 3' ends of Xa7, respectively. Among them, the specific primer for 5'RACE amplification is 5'-TGCCACCGATGAGGTAATCCTGC-3', and the specific primer for 3'RACE amplification is 5'-CCTCCTCGGAATCTGGCTCATGTC-3'. RACE product passed pEASY TM -Blunt Zero CloningKit for cloning. After sequencing, it was determined that the transcription start site (TSS) of Xa7 was located at 104bp upstream of the initiation codon (ATG); at the same time, it was determined that the 3'UTR length of Xa7 was 253bp ( figure 2 A).

[0043] Analysis of the expression pattern of Xa7 gene: IRBB7 and IR24 were inoculated with Xanthobacterium sourbacillus (PXO86) at the booting stage by "leaf-cutting method" and samples we...

Embodiment 3

[0051] Example 3 The key functional sites of the Xa7 gene were verified by CRISPR / Cas9-mediated gene knockout

[0052] In order to further verify the functions of the Xa7 promoter region AvrXa7EBE and CDS region sequences, the present invention also utilizes the CRISPR / Cas9 system to construct gene knockout transgenic lines of these two functional regions. The vector used for gene knockout is the binary expression vector pYLCRISPR / Cas9P provided by Liu Yaoguang Laboratory of South China Agricultural University ubi -H (disclosed in the literature "Ma et al.2015, Arobust CRISPR / Cas9 system for convenient high-efficiency multiplex genome editing in monocot and diocot plants. Mol. Plant.8, 1274-1284."), the intermediate vector pYLsgRNA- OsU6aL (disclosed in the literature "Ma et al.2015, A robust CRISPR / Cas9 system for convenient high-efficiency multiplex genome editing in monocot and diocotplants.Mol.Plant.8,1274-1284."), pYLsgRNA-OsU3aL (already In the literature "Ma et al.2015...

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Abstract

The invention discloses a rice bacterial leaf blight resistant protein, and a coding gene and application thereof. The name of the rice bacterial leaf blight resistant protein is Xa7 protein; the amino acid sequence of the rice bacterial leaf blight resistant protein is shown as SEQ ID NO.1; and the nucleotide sequence of the gene for coding the rice bacterial leaf blight resistant protein is shown as SEQ ID NO.2. The cloning of the Xa7 functional gene is finally completed by constructing a genome BAC library of a rice variety IRBB7, screening the library, sequencing candidate insertion fragments, predicting an AvrXa7 recognition site by a target insertion fragment sequence, and carrying out a series of transgenic function complementation tests and gene knockout tests. The invention provides the sequence of the Xa7 functional gene for the first time; and the Xa7 functional gene can be used for researching a rice bacterial leaf blight resistance mechanism, cultivating a rice variety having disease resistance to rice bacterial leaf blight or other disease-resistant crops, or breeding a rice variety having disease resistance to rice bacterial leaf blight.

Description

technical field [0001] The invention belongs to the field of biotechnology, in particular to a rice bacterial blight resistance protein and its coding gene and application. Background technique [0002] Bacterial blight (Xanthomonas oryzae pv. oryzae (Xoo)) is one of the main diseases of rice in my country and Southeast Asia, which is the main rice producing area in the world, and seriously threatens the safety of rice production. The use of host resistance is an effective measure to control the disease. However, due to the pathogenic variation of pathogenic bacteria, the variety resistance is often lost. The persistence of variety resistance and its mechanism have become a key point in current disease resistance research. A deep understanding of the molecular mechanism of persistent disease resistance will be of great help to rice varieties. Durable resistance, continuous and effective disease control is of great significance [Wu Shangzhong, 1982, "Rice Blight and Its Cont...

Claims

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Application Information

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IPC IPC(8): C07K14/415C12N15/29C12N15/82A01H5/00A01H6/46
CPCC07K14/415C12N15/8281A01H1/125A01H5/00A01H6/46C12N15/82
Inventor 汪聪颖朱小源陈深苏菁曾列先汪文娟冯爱卿杨健源封金奇陈炳伍圣远张梅英
Owner PLANT PROTECTION RES INST OF GUANGDONG ACADEMY OF AGRI SCI
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