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Non-Natural Amino Acids

a technology of amino acids and desamino acids, applied in the direction of depsipeptides, peptide sources, peptide/protein ingredients, etc., can solve the problems of poor drug candidates, unable to cross biological membranes with most peptides, and rarely showing the selectivity required of a viable drug candidate, etc., to achieve selective, long-lasting biological activity, and long-lasting biological activity

Inactive Publication Date: 2008-06-12
DIX THOMAS A
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Benefits of technology

[0014]As used herein, the term “non-natural amino acid” refers to an organic compound that is a congener of a natural amino acid in that it has a structure similar to a natural amino acid so that it mimics the structure and reactivity of a natural amino acid. The non-natural amino acid as defined herein generally increases or enhances the properties of a peptide (e.g., selectivity, stability) when the non-natural amino acid is either substituted for a natural amino acid unit of a peptide or otherwise incorporated into a peptide.
[0059]The substitution of desamino, alkyl amino acid moiety for an arginine or lysine moiety of a biologically active peptide provides a truncated peptide having selective, long-lasting biological activity. Any known biologically active peptide having an arginine and / or lysine moiety within its amino acid sequence can serve as the basis for the corresponding truncated peptide. Beginning at that ARG or LYS moiety, the truncated peptide will have the same downstream sequence as the known, biologically active peptide but the upstream sequence will be absent. In addition, that ARG or LYS moiety will be exchanged for a desamino, alkyl amino acid moiety, thus providing the truncated peptide. Several known biologically active peptides are penultimately formed as pro-peptides with an arginine or lysine moiety at the pro-peptide or precursor cleavage position, or are formed as final peptides containing an arginine or lysine moiety at a position that can be cleaved to provide an active truncated peptide. Trypsin is an enzyme specific for such cleavage points. Examples include glucagon-like peptide, neurotensin, proinsulin, and thrombin. The truncated versions of these examples with a desamino, alkyl amino acid compound substituted for the arginine or lysine moiety provide selective, long-lasting biological activity.

Problems solved by technology

Inherent in the chemistry and biology of peptides, however, are several factors that also make them poor drug candidates.
In addition, most peptides are unable to cross biological membranes, including the small intestine and blood brain barrier (BBB).
Finally, peptides often bind to more than one receptor or receptor subtype, thus rarely showing the selectivity required of a viable drug candidate.
Other therapeutic compounds employ a prodrug moiety intended to modify its overall hydrophobicity, which can result in the compound crossing biological membranes.
While each of these strategies has been used to improve peptides as drug candidates, a universal solution for creating stable, receptor-selective peptides that cross biological barriers has not been discovered.

Method used

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experimental examples

AND PROTOCOLS

[0354]The following examples and protocols are put forth so as to provide those of ordinary skill in the art with a complete disclosure and description of how the compounds claimed herein are made and evaluated, and are intended to be purely exemplary of the invention and are not intended to limit the scope of what the inventors regard as their invention. Efforts have been made to ensure accuracy with respect to numbers (e.g., amounts, temperature, etc.) but some errors and deviations should be accounted for. Unless indicated otherwise, parts are parts by weight, temperature is in ° C. and is at room temperature, and pressure is at or near atmospheric.

[0355]Starting Materials. Solvents are from Fisher Scientific (Pittsburgh, Pa.) and reagents from Aldrich (Milwaukee, Wis.) unless otherwise noted.

[0356]Abbreviations. Trisyl-N3, 2,4,6-triisopropylbenzenesulfonyl azide; Et3N, triethylamine; t-BuCOCl, trimethylacetylchloride; n-BuLi, n-butyl lithium; H2, hydrogen gas; Pd—C,...

example 1

[0357](3(2S),4S)-3-(2-methyl-5-bromo-1-oxovaleryl)-4-(phenylmethyl)-2-oxazolidinone (24a) (FIG. 3). Intermediate 23a was prepared as described previously (57). A solution of 17.4 mL (5 eq) of potassium bis(trimethylsilyl) amide (KHMDS) was added to 100 mL anhydrous tetrahydrofuran (THF) and cooled to −78° C. under positive nitrogen (N2) pressure. A solution of 23a (5.18 g, 15.23 mmol) in 10 mL THF under N2 was cooled to −78° C. and cannulated into the KHMDS solution. This mixture was stirred at −78° C. for 30 min to effect enolate formation. Methyl iodide (CH3I) (1.90 mL, 2 eq) was added to the solution via cannula and stirred at −78° C. for 1 hr at which time the reaction was quenched with 4.09 mL (5 eq) of glacial acetic acid. The solution was warmed to room temperature while stirring over 2 hr and the THF removed in vacuo. The resulting yellow slurry was dissolved in 200 mL half-saturated brine and extracted with CH2Cl2 (3×100 mL). The CH2Cl2 layers were combined, dried over anhy...

example 2

[0358](3(2S),4S)-3-(2-methyl-6-bromo-1-oxohexanyl)-4-(phenylmethyl)-2-oxazolidinone (24b). A slightly modified procedure was used to give 24b. Directly following KHMDS addition to 23b, 5 eq of CH3I was added and the reaction stirred at −78° C. under N2 for 1 hr. Quenching with glacial acetic acid and subsequent extraction and purification protocol was as described above for 24a. Additional silica gel purification eluting with 100% CH2Cl2 gave pure 24b in 10% yield. 1H NMR (400 MHz, CDCl3) δ 7.36-7.19 (m, 5H), 4.72-4.65 (m, 1H), 4.25-4.16 (d J=4.2 Hz, 2H), 3.77-3.67 (m, 1H), 3.46-3.36 (t, J=7.0 Hz, 2H), 3.29-3.22 (dd, J=4.0, 14.0 Hz, 1H), 2.82-2.74 (dd, J=9.0, 14.0 Hz, 1H), 1.92-1.74 (m, 3H), 1.50-1.42 (m, 3H), 1.25-1.21 (d, J=7.2 Hz, 3H); 13C NMR (100 MHz, CDCl3) δ 176.9, 153.2, 135.3, 129.6, 129.1, 66.4, 55.6, 38.1, 37.8, 34.1, 32.8, 32.5, 26.1, 18.7.

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Abstract

This invention relates to non-natural desamino alkyl amino acid compounds, methods of making, and peptides containing these compounds as their N-terminus moieties. A preferred example is neurotensin (8-13) in which the N terminus is an alpha desamino, alpha methyl N,N dimethyl homolysine residue.

Description

CLAIM OF PRIORITY[0001]This patent document claims the benefit of priority to U.S. Provisional Patent Application Ser. No. 60 / 581,333, filed on Jun. 17, 2004, which is herein incorporated by reference.FIELD OF THE INVENTION[0002]This invention relates to non-natural desamino, alkyl amino acids, methods of making them, their utilization in peptides, and the therapeutic, diagnostic and screening use of those peptides.BACKGROUND OF THE INVENTION[0003]The influence that some non-natural amino acids have on the structural and biological activity of peptides has been briefly studied. For example, Moore et al. (Can. J. Biochem. 1978, 56, 315) disclosed the effect of the basic amino acid side chain length and the penultimate residue on the hydrolysis of benzoyldipeptides by carboxylicpeptidase B1 (CPB). Non-natural amino acids including homolysine and homoarginine were incorporated into small peptide chains, and the kinetic parameters were determined for the CPB catalyzed hydrolysis of the ...

Claims

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Application Information

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IPC IPC(8): A61K38/08C07D263/38A61K31/421C07C53/19A61K31/19C12Q1/02A61P29/00A61P25/18A61P35/00G01N33/68C07D233/02A61K31/4168C07K7/06
CPCA61K38/00C07C257/14C07D231/06C07D239/14C07D233/48C07C229/08C07C229/12C07C279/14C07D233/46C07K7/083A61P25/00A61P25/04A61P25/18A61P29/00A61P29/02A61P3/04A61P31/12A61P35/00A61P43/00A61P5/00A61P5/02A61P5/24A61P7/02A61P7/10A61P3/10
Inventor DIX, THOMAS A.
Owner DIX THOMAS A
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