HRM (high resolution melting) method and kit for clinically detecting EGFR (epidermal growth factor receptor) gene mutation
A kit and gene technology, applied in the field of HRM method and kit for clinical detection of EGFR gene mutation, can solve the problems of poor intuitive results, large consumption of reagents, low detection accuracy, etc., and achieve simple and rapid response, low price Low cost and high detection sensitivity
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Embodiment 1
[0063] Example 1 Detection of EGFR gene mutation in paraffin-embedded tissue
[0064] ①Cut the wax block specimen into 5μm slices, 10 slices for each case, and put them into centrifuge tubes. Change the position of the slicing knife for each case. After the position of the slicing knife is changed, wash it thoroughly with 1mol / L NaOH and running water, dry it and continue to use it to prevent cross-contamination. ② After xylene dewaxing, DNA was extracted using QIAamp DNA FFPE Tissue kit (manufactured by QIAGEN, Germany) and operated according to the instructions.
[0065] (2) The primer sequences and detected mutation sites are shown in Table 2.
[0066] Table 2. Primer sequences and detected mutation sites
[0067]
[0068]
[0069] *Amino acid changes are in bold, and corresponding base changes are in brackets.
[0070] The above 5 pairs of primers were used for PCR reaction to amplify the target DNA. The PCR reaction solution consisted of 10×buffer (Biostar), 1...
Embodiment 2
[0077] The detection of the EGFR gene mutation of embodiment 2 patient's peripheral blood serum
[0078] (1) Extract the DNA template from the patient's peripheral blood serum
[0079] ① Take 3 mL of non-anticoagulated blood, centrifuge at 6000 rpm for 8 minutes, and take the upper serum (don’t suck white blood cells and platelets). ②Use the Qiagen Blood Mini kit (manufactured by QIAGEN, Germany) to extract DNA from serum samples, and operate according to the instructions.
[0080] (2) The primer sequences and detected mutation sites are shown in Table 2.
[0081] The 5 pairs of primers in Table 2 were used for PCR reaction to amplify the target DNA. The PCR reaction solution consisted of 10×buffer (Biostar), 10 μmol / L upstream and downstream primers, 10 mmol / L dNTPs (Roche), 2U Taq DNA polymerase (Biostar), LC GREEN (Idaho Technology Inc, USA) and sterile water composition.
[0082] 10 μL PCR reaction system: Taq buffer (1×) 1 μL, dNTPs (10 mM) 1 μL, Taq (2U / μL) 1 μL, u...
Embodiment 3
[0088] The detection of embodiment 3 clinical specimens
[0089] According to the method of Example 1, double-blind detection of EGFR gene mutation was performed on 68 clinical lung cancer patients with paraffin-embedded tissue samples (Department of Pathology, Zhongnan Hospital of Wuhan University, Wuhan, Hubei) and 10 EGFR quality control products from the Ministry of Health (Table 1). The test results are in good agreement with the clinical report results (Xiamen Aide, Human EGFR Gene Mutation Detection Kit, Fluorescence Quantitative PCR). The specific results are shown in Tables 3-7.
[0090] Table 3. Comparison of G719X mutation detection results in exon 18 of EGFR gene
[0091] sample number
HRM method
Xiamen Aide kit
1
Negative
Negative
2
Negative
Negative
3
Negative
Negative
4
Negative
Negative
5
Negative
Negative
6
Negative
Negative
7
Ne...
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