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HRM (high resolution melting) method and kit for clinically detecting EGFR (epidermal growth factor receptor) gene mutation

A kit and gene technology, applied in the field of HRM method and kit for clinical detection of EGFR gene mutation, can solve the problems of poor intuitive results, large consumption of reagents, low detection accuracy, etc., and achieve simple and rapid response, low price Low cost and high detection sensitivity

Active Publication Date: 2015-07-15
WUHAN UNIV
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

At present, the patent invented by Suzhou Weizhen Biotechnology Co., Ltd. involves the detection of EGFR gene mutation by HRM method, but its detection accuracy is relatively low (3 out of 40 pairs of samples were found to have inconsistent results), and the consumption of reagents is large (20μL reaction system). The reaction time is long, and the results are not intuitive (critically positive is difficult to distinguish), etc.; the fluorescent quantitative PCR method has the disadvantages of high sample requirements, high reagent costs, and long reaction time.
With the increasing number of clinical specimens, the existing clinical EGFR gene mutation detection methods can no longer meet the needs, and there is an urgent need for a fast, accurate, easy-to-operate, high-sensitivity EGFR gene detection technology that avoids cross-contamination

Method used

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  • HRM (high resolution melting) method and kit for clinically detecting EGFR (epidermal growth factor receptor) gene mutation
  • HRM (high resolution melting) method and kit for clinically detecting EGFR (epidermal growth factor receptor) gene mutation
  • HRM (high resolution melting) method and kit for clinically detecting EGFR (epidermal growth factor receptor) gene mutation

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0063] Example 1 Detection of EGFR gene mutation in paraffin-embedded tissue

[0064] ①Cut the wax block specimen into 5μm slices, 10 slices for each case, and put them into centrifuge tubes. Change the position of the slicing knife for each case. After the position of the slicing knife is changed, wash it thoroughly with 1mol / L NaOH and running water, dry it and continue to use it to prevent cross-contamination. ② After xylene dewaxing, DNA was extracted using QIAamp DNA FFPE Tissue kit (manufactured by QIAGEN, Germany) and operated according to the instructions.

[0065] (2) The primer sequences and detected mutation sites are shown in Table 2.

[0066] Table 2. Primer sequences and detected mutation sites

[0067]

[0068]

[0069] *Amino acid changes are in bold, and corresponding base changes are in brackets.

[0070] The above 5 pairs of primers were used for PCR reaction to amplify the target DNA. The PCR reaction solution consisted of 10×buffer (Biostar), 1...

Embodiment 2

[0077] The detection of the EGFR gene mutation of embodiment 2 patient's peripheral blood serum

[0078] (1) Extract the DNA template from the patient's peripheral blood serum

[0079] ① Take 3 mL of non-anticoagulated blood, centrifuge at 6000 rpm for 8 minutes, and take the upper serum (don’t suck white blood cells and platelets). ②Use the Qiagen Blood Mini kit (manufactured by QIAGEN, Germany) to extract DNA from serum samples, and operate according to the instructions.

[0080] (2) The primer sequences and detected mutation sites are shown in Table 2.

[0081] The 5 pairs of primers in Table 2 were used for PCR reaction to amplify the target DNA. The PCR reaction solution consisted of 10×buffer (Biostar), 10 μmol / L upstream and downstream primers, 10 mmol / L dNTPs (Roche), 2U Taq DNA polymerase (Biostar), LC GREEN (Idaho Technology Inc, USA) and sterile water composition.

[0082] 10 μL PCR reaction system: Taq buffer (1×) 1 μL, dNTPs (10 mM) 1 μL, Taq (2U / μL) 1 μL, u...

Embodiment 3

[0088] The detection of embodiment 3 clinical specimens

[0089] According to the method of Example 1, double-blind detection of EGFR gene mutation was performed on 68 clinical lung cancer patients with paraffin-embedded tissue samples (Department of Pathology, Zhongnan Hospital of Wuhan University, Wuhan, Hubei) and 10 EGFR quality control products from the Ministry of Health (Table 1). The test results are in good agreement with the clinical report results (Xiamen Aide, Human EGFR Gene Mutation Detection Kit, Fluorescence Quantitative PCR). The specific results are shown in Tables 3-7.

[0090] Table 3. Comparison of G719X mutation detection results in exon 18 of EGFR gene

[0091] sample number

HRM method

Xiamen Aide kit

1

Negative

Negative

2

Negative

Negative

3

Negative

Negative

4

Negative

Negative

5

Negative

Negative

6

Negative

Negative

7

Ne...

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PUM

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Abstract

The invention discloses an HRM (high resolution melting) method and kit for clinically detecting EGFR (epidermal growth factor receptor) gene mutation. The DNA (deoxyribonucleic acid) of a sample to be detected is extracted, and PCR (polymerase chain reaction) amplification and HRM scanning analysis are performed by use of primers shown by SEQ ID No.1-30; the type of the EGFR gene mutation is judged according to the scanning analysis result; if the HRM scanning no-parting sample is negative, the HRM scanning parting sample is positive. The kit disclosed by the invention comprises the primers, a negative control, a positive control, a PCR reagent, LCGREEN and the like. All primers of the kit can perform PCR reaction at the same temperature, the detection sensitivity is high, the specificity is strong, the reaction system is small, the detection sample is widely available, the reaction is simple and quick, the reagent is cheap, and the flux is high. By adopting the method and kit disclosed by the invention, the whole detection process is simple to operate, time-saving, low in cost, suitable for quickly detecting the EGFR gene mutation of clinical tumor patients, and good for guiding the clinical individualized medication.

Description

technical field [0001] The invention relates to the technical field of biological detection, in particular to an HRM method and a kit for clinical detection of EGFR gene mutation. Background technique [0002] Epidermal Growth Factor (EFG) is one of the important members of the growth factor family. It binds to Epidermal Growth Factor Receptor (EGFR) and initiates downstream signaling pathways to play a series of physiological and pathological functions. effect. EGFR is a transmembrane glycoprotein composed of 1186 amino acids and a molecular weight of 170kD. Its structure includes an extracellular binding region, a transmembrane region, and an intracellular region mainly composed of tyrosine kinases. EGFR is mainly distributed on the cell membrane surface, belongs to the type I tyrosine kinase receptor family, and has tyrosine kinase activity. EGFR activation activates multiple downstream signal transduction pathways, such as RAS-RAF-MEK-MAPK pathway, PI3K-Akt pathway, PK...

Claims

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Application Information

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Patent Type & Authority Patents(China)
IPC IPC(8): C12Q1/68
CPCC12Q1/686C12Q2527/107
Inventor 刘松梅黄景涛
Owner WUHAN UNIV
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