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Suspension array for detecting serotype enterobacter aerogenes typing and application

A technology of Enterobacter aerogenes and serotyping, applied in the determination/inspection of microorganisms, resistance to vector-borne diseases, DNA/RNA fragments, etc., can solve the problem of incomplete antiserum, long cycle, difficulties in antiserum production and quality control, etc. problem, to achieve the effect of high detection throughput and short detection time

Active Publication Date: 2018-01-16
NANKAI UNIV
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0004] 1) The work of establishing a serological typing system is cumbersome and takes a long time. For example, it took more than 30 years (about 1944-1977) to establish a relatively comprehensive E. coli serological typing system; therefore, the serological classification of some important pathogenic bacteria No type system has yet been established, which has brought great difficulties to the identification, monitoring and traceability of these pathogenic bacteria;
[0005] 2) The production and quality control of antiserum are relatively difficult. In order to avoid cross-reaction, a large number of adsorption reactions are required in the production of antiserum;
[0006] 3) Many antisera are produced and stored by only a few units in the world, and the antisera used for identification are seriously incomplete. The main companies that produce bacterial antisera in the world are Difco in the United States, Denka Seiken in Japan, and S&A in Thailand. Provide less than 20% of the species actually needed; 4) The experimental process of serological identification takes a long time. Taking Salmonella as an example, it takes 2-6 days from obtaining pure culture to completing serotype identification
Moreover, due to the strong drug resistance of the bacteria, it brings difficulties to clinical anti-infection treatment.
Unlike some other important pathogenic bacteria, such as Escherichia coli, Salmonella, Vibrio parahaemolyticus, etc., there is no report on the serological typing system of Enterobacter aerogenes

Method used

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  • Suspension array for detecting serotype enterobacter aerogenes typing and application
  • Suspension array for detecting serotype enterobacter aerogenes typing and application
  • Suspension array for detecting serotype enterobacter aerogenes typing and application

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0068] Design and Preparation of Specific Primers for Enterobacter aerogenes Serotype 1-8

[0069] (1) Both Enterobacter aerogenes serotypes 1-3 and 5-8 were selected wzy The gene is the target gene sequence, and the glycosyltransferase gene is selected for serotype 4 orf8 is the target gene sequence.

[0070] (2) Import the selected target gene sequences for Enterobacter aerogenes serotypes 1-8 into the primer design software Primer Primer 5.0, and set parameters. Among them, select the sense strand and complementary strand output mode; the sequence amplification length is 150-350bp; Haripin: none; Dimer: none: False Priming: none; Cross Dimer: none. Run the program to obtain a pair of specific primer sequences for the sense strand and the antisense strand of each serotype.

[0071] (3) Send the designed primer sequences to Thermo Fisher Scientific (China) Co., Ltd. for DNA synthesis and PAGE purification for future use. Among them, the synthesis of the antisense strand...

Embodiment 2

[0073] Design and Preparation of Specific Probes for Enterobacter aerogenes Serotype 1-8

[0074] (1) Both Enterobacter aerogenes serotypes 1-3 and 5-8 were selected wzy The gene is the target gene sequence, and the glycosyltransferase gene is selected for serotype 4 orf8 is the target gene sequence.

[0075] (2) Import the selected target gene sequences for Enterobacter aerogenes serotypes 1-8 into the primer design software Primer Primer 5.0, and set parameters. Wherein, only the sense strand output mode is selected; Haripin: None; Dimer: None: False Priming: None; Cross Dimer: None, and the position of the sequence is within the position of the sense strand and antisense strand primers in Example 1. Run the program to get 1 specific probe for each serotype.

[0076] (3) Send the designed probe sequence to Thermo Fisher Scientific (China) Co., Ltd. for DNA synthesis. At the same time, 12 carbon atoms are connected to the 5' end of the sequence as a connecting arm, and t...

Embodiment 3

[0078] Coupling of specific probes to microspheres (need to be protected from light)

[0079] (1) Suspend the microspheres on the vortex at the highest speed for 30 s, check the numbers of the microspheres and probes, and mark them.

[0080] (2) Take 80 microliters of microspheres in a 1.5mL centrifuge tube, centrifuge at 12000 rpm for 2 minutes.

[0081] (3) Discard the supernatant, resuspend with 10 microliters of 0.1 mol / L 2-(N-morpholine)ethanesulfonic acid solution (MES) (pH4.5), and vortex thoroughly to disperse the microspheres;

[0082] (4) Add 2 μl of probe (placed at room temperature in advance) and 6 μl of freshly prepared 1-(3-dimethylaminopropyl)-3-ethylcarbodiimide salt at a concentration of 10 mg / mL salt solution (EDC), mix well, and incubate at room temperature in the dark for 30 minutes (shake and mix every 15 minutes).

[0083] (5) Add 6 microliters of freshly prepared 10 mg / mL EDC solution, mix well, and incubate at room temperature in the dark for 30 minu...

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Abstract

The invention provides a specific oligonucleotide sequence for detecting serotypes 1-8 of enterobacter aerogenes. The oligonucleotide contains: (1), a DNA fragment selected from wzy genes of the enterobacter aerogenes of types 1, 2, 3, 5, 6, 7 and 8; (2), a DNA fragment selected from orf8 genes of the enterobacter aerogenes of type 4. A suspension array detection system and method for the serotypes 1-8 of the enterobacter aerogenes are established through combination with a Bio-Plex 200 suspension array system of the Bio-Rad company, the blank of serological typing technology of the enterobacter aerogenes is filled up, and the invention has great significance in clinical detection and epidemiological monitoring of the important pathogenic bacterium.

Description

technical field [0001] The invention belongs to the technical field of bacterial detection methods, and relates to a suspension chip used for typing Enterobacter aerogenes common serotypes in my country and its application. Background technique [0002] Serological typing has been widely used since the 1930s and has a history of more than 80 years. It can further classify bacteria within species / genus and is an important method of bacterial identification. At present, serological identification methods are used The most common method for identification and traceability of pathogenic bacteria. For example: our country targets Shigella (GB / T 4789.5-2012), diarrhea-causing E. coli (GB / T 4789.6-2003), E. Bacteria (GB / T4789.7-2013), Salmonella (GB / T 4789.4-2010) and Yersinia enterocolitica (GB / T 4789.8-2008) and other pathogenic bacteria detection standards have adopted serological identification Methods. Serological identification is mainly based on the immunogenicity of bact...

Claims

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Application Information

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IPC IPC(8): C12Q1/689C12N15/11
CPCY02A50/30
Inventor 郭玺刘斌汪露武潘张媛媛
Owner NANKAI UNIV
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