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Method for detecting three kinds of urogenital canal mycoplasma by loop-mediated isothermal amplification technology

A technology for mycoplasma genitalium and genitourinary tract, applied in the direction of microorganism-based methods, biochemical equipment and methods, recombinant DNA technology, etc., can solve problems such as false negatives, long detection time, LAMP special primers and kits, etc.

Inactive Publication Date: 2018-02-13
TIANJIN MEDICAL UNIV
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

At present, the gold standard for laboratory diagnosis of mycoplasma is isolation culture, but there are usually two disadvantages in the isolation culture method. One is that the detection time is too long, and it takes at least 3 weeks for typical colonies to grow on solid plates.
Second, it is difficult to isolate and cultivate, some mycoplasma (such as MG) have strict nutritional requirements, the isolation and culture of clinical specimens is not easy to succeed, and it is easy to cause false negative results
[0006] To sum up, the application of LAMP in the detection of Mycoplasma pneumoniae has been reported at home and abroad, but so far, there are no LAMP-specific primers and kits for the detection of UU, MG and MH in the market.

Method used

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  • Method for detecting three kinds of urogenital canal mycoplasma by loop-mediated isothermal amplification technology
  • Method for detecting three kinds of urogenital canal mycoplasma by loop-mediated isothermal amplification technology
  • Method for detecting three kinds of urogenital canal mycoplasma by loop-mediated isothermal amplification technology

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0053] Example 1, Primer Design for LAMP Detection of UU, MG and MH

[0054] UU, MG and MH-specific conserved target sequences were retrieved from the American Gene Database (NCBI GenBank AccessionM36190.1; NCBI GenBank NR_074611.1; NCBI GenBank AJ243692.1), and the online primer design software PrimerExplorerV4 was used to upload the target sequence. Several sets of primer sequences were preliminarily obtained. According to the key factors of LAMP primer design, mainly including the stability of the primer end, GC content, the distance between the primers and the secondary structure, the final LAMP primers, UU, MG and MH primer sequences are shown in Table 1. , 2 and 3 (see the content of the invention for details).

Embodiment 2

[0055] Embodiment 2, the establishment of the LAMP detection method of UU, MG and MH of the present invention

[0056] Use the primers obtained in Example 1 for LAMP detection of UU, MG and MH to perform LAMP detection on urogenital specimens to obtain the best reaction system and reaction conditions. The specific steps are as follows:

[0057] 1. Determination of the best response system

[0058] Under the same reaction conditions (60min at 63°C), the optimal reaction system contains the following components:

[0059] [1] Reaction system

[0060] After the nucleic acid in the sample to be tested was extracted using the Genomic DNA Extraction Kit of Tienensis Bacteria, the genomic DNA containing UU, MG or MH was used as a template, and the isothermal amplification was carried out under the guidance of the special primers for LAMP obtained in Example 1. Among them, the 25 μl LAMP reaction system includes: 2 μl of genomic DNA containing UU, MG or MH, 20 mM Tris HCl (pH 8.8), 1...

Embodiment 3

[0067] Example 3, the specificity and sensitivity of the LAMP detection method of UU, MG and MH of the present invention

[0068] One, the specificity of the LAMP detection method of goose parvovirus of the present invention

[0069] Using the common human urogenital tract pathogens Enterobacter cloacae, Neisseria gonorrhoeae, Chlamydia trachomatis, Candida albicans, herpes simplex virus and Escherichia coli genomic DNA as templates, and nucleic acid-free water as a negative control, detection example 2 The specificity of the best LAMP detection method obtained, the reaction system and reaction conditions are the same as in Example 2. The specific detection results of the LAMP detection method of UU, MG and MH of the present invention are as follows image 3 As shown, the results did not detect Enterobacter cloacae, Neisseria gonorrhoeae, Chlamydia trachomatis, Candida albicans, herpes simplex virus or Escherichia coli, suggesting that the LAMP detection method of UU, MG and ...

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Abstract

The invention discloses an LAMP detection method for three kinds of urogenital canal infection mycoplasma which are common for human and a dedicated primer and a kit thereof. The method is applied toperforming isothermal amplification on ureaplasma urealyticum (UU), mycoplasma genitalium (MG) and mycoplasma hominis (MH). The LAMP primer is designed according to specific conserved sequences of theUU, the MG and the MH, and each group of the primer includes four piece of oligonucleotide (shown in a table 1, a table 2 and a table 3 in the description). When being applied to the urogenital canalmycoplasma, the LAMP primer present white precipitate when being observed by the naked eyes; in positive reaction, after SYBR GREEN is added, fluorescent green is remarkably enhanced when being observed under an ultraviolet lamp. Detection results of a real-time turbidity meter show that product turbidity can be increased along with prolonging reaction time; after being detected by gel electrophoresis, the LAMP primer is in a trapezoid stripe. The LAMP detection method disclosed by the invention provides a novel technological platform for mycoplasma detection; a sample to be measured can be applied to DNA extracted by commercialized kits or purified DNA and is also suitable for coarse extracted DNA with a boiling method as a representative; the LAMP detection method is suitable for beingpopularized and applied in grassroots units, field monitoring and bedside detection.

Description

technical field [0001] The present invention belongs to the application of a molecular biology detection method represented by isothermal amplification in three common human urogenital infection mycoplasma, that is, the ring-mediated isothermal amplification detection of Ureaplasma urealyticum, Mycoplasma genitalium and Mycoplasma hominis Technology and its special primers, detection methods and kits. Background technique [0002] Mycoplasma (Mycoplasma) is a prokaryotic cell-type microorganism between bacteria and viruses. So far, there are about 20 species of mycoplasma that can cause human infection, among which there are mainly three kinds of mycoplasma that cause human genitourinary tract infection, namely Ureaplasma urealyticum (UU), Mycoplasma genitalium (Mycoplasma Genitalium, MG) and human type Mycoplasma Hominis (MH). Studies have shown that UU, MG and MH are the main pathogens causing nongonococcal urethristis (NGU). In European and American countries, NGU infe...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/689C12Q1/6844C12Q1/04C12N15/11C12R1/35
CPCC12Q1/6844C12Q1/689C12Q2531/119
Inventor 谷雅君王毅超刘运德
Owner TIANJIN MEDICAL UNIV
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