Genetic assay for protein nuclear transport

a gene assay and protein technology, applied in the field of gene assays, can solve the problems of not representing a functional signal, difficult to predict the presence of proteins in a given protein, and both methods have serious technical disadvantages, and achieve the effect of decreasing the expression level of reporter genes

Inactive Publication Date: 2005-06-07
THE RES FOUND OF STATE UNIV OF NEW YORK
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Benefits of technology

[0017]More particularly, the invention provides a simple functional assay for protein nuclear import and export which circumvents all of the above mentioned difficulties. This assay has been used to demonstrate the nuclear import and export activities of a capsid protein (CP) from a plant geminivirus, suggesting a role for CP in nuclear shuttling of viral genomes during the infection process. The simple genetic system is used to detect active nuclear import (NLS) and export targeting signals (NES) based on their function within yeast cells. To generate one embodiment of this system, a gene encoding the bacterial LexA protein was modified (mLexA) to abolish its intrinsic nuclear targeting activity and fused to a sequence coding for the activation domain of the yeast Gal4 protein (Gal4AD) in the absence or presence of the SV40 large T-antig

Problems solved by technology

The relatively small size of the NLS and NES sequences and, more importantly, the lack of clear and consistent consensus motifs in these signals, make it difficult to predict their presence in a given protein based solely on the analysis of its amino acid sequence.
Furthermore, even if a consensus NLS or NES were found, it may not represent a functional signal.
Both methods have serious technical disadvantages.
The first approach is very labor-intensive and requires

Method used

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  • Genetic assay for protein nuclear transport
  • Genetic assay for protein nuclear transport
  • Genetic assay for protein nuclear transport

Examples

Experimental program
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Effect test

example i

Construction of Vectors for the Genetic Assay of Nuclear Import

[0085]These constructs are designed to express fusion proteins composed of three functional parts: a modified LexA protein, an activation domain of the GAL4 protein, and a protein to be tested for its nuclear import. These components were obtained and joined together as follows:

[0086](A) First, the Gal4 activation domain (AD), derived from the pGAD424 plasmid (FIG. 1), was PCR-amplified with and without the adjacent SV40 NLS (AD with NLS was used for positive control constructs, see below). During amplification, EcoRI and BamHI restriction sites were introduced at the 5′ and 3′ ends of the amplified fragment, respectively. The PCR mixtures contained the following components:

[0087]

(a) PCR of GAL4 AD without NLSPrimer GAD5 (20 μM)5μlPrimer GAD3BdE (20 μM)5μldNTPs (10 mM each for dATP,2μldTTP, dGTP, dCTP)Pfu reaction buffer (10X)10μlTemplate DNA (pGAD424, 10 ng / μl)5μlPfu polymerase (0.5μ / μl)1μlDouble distilled water72μlTOTA...

example ii

One-Hybrid Genetic Assay for Protein Nuclear Import

[0103]The fusion protein derived from pLexA::GAL4AD (−)NLS::VirE2 enters the cell nucleus and activates the reporter gene expression, indicating that LexA carries a cryptic NLS although it is a prokaryotic protein and is not expected to enter the nucleus. Thus it was necessary to identify and disable this signal, resulting in a modification of the LexA protein (see item D above).

[0104]The fusion protein derived from pmLexA:: GAL4AD (−)NLS, which lacks a tested protein, enters the cell nucleus by diffusion due to its small size (approximately 38 kDa). This import, however, is less efficient than that of NLS-containing fusion products, resulting in a weaker expression of the β-galactosidase reporter. Nevertheless, it is recommended to use pmLexA::GAL4AD (−)NLS::VirE2 as a negative control for the assay. This 106 kDa fusion protein does not enter the nucleus at all, producing zero expression of the reporter.

[0105]The user has an option...

example iii

[0109]Nuclear import assay. The basic strategy of these experiments is based on expression in yeast cells of a triple-fusion protein comprising bacterial LexA, yeast Gal4 activation domain (Gal4AD), and the tested protein encoded by a cDNA subcloned in-frame downstream of Gal4AD (FIG. 16). If the tested protein contains a functional NLS, the fusion product will enter the yeast cell nucleus. Following this nuclear import, the LexA domain will target the fusion protein to the LexA operator sites of the reporter lacZ gene contained in the L40 yeast strain. Gal4AD then activates the expression of lacZ, resulting in β-galactosidase activity. In the absence of a NLS, the fusion protein is unable to reach the cell nucleus and, thus, activate the reporter gene.

[0110]In addition to induction of the β-galactosidase reporter, this one-hybrid system allows direct selection for the nuclear import of the tested protein in the same L40 yeast strain, which contains an integrated copy of the HIS3 ge...

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Abstract

The invention provides methods of determining the presence of a nuclear localization signal and/or the presence of a nuclear export signal in a protein of interest. The invention further provides chimeric nucleic acids and recombinant host cells for use in such methods. Additionally provided is a nucleic acid molecule encoding a modified LexA protein, wherein the modified LexA protein has no nuclear localization signal, as well as the modified LexA protein itself. In the nuclear import assay, if a protein of interest fused to a mLexA-Gal4AD hybrid contains a functional NLS, the fusion product will enter the yeast cell nucleus and activate the expression of reporter genes. In the nuclear export assay, if a protein of interest fused to a mLexA-SV40 NLS-Gal4AD hybrid contains a functional NES, the fusion product localized to the cell nucleus will exit into the cytoplasm, decreasing the reporter gene expression levels.

Description

[0001]This application claims priority of U.S. Provisional Patent Application No. 60 / 107,417, filed Nov. 6, 1998.[0002]The subject matter of this application was made with support from the United States Government under National Institutes of Health Grant No. GM50224 and USDA Grant No. 9402564. The U.S. Government may have certain rights in this invention.FIELD OF THE INVENTION[0003]The subject invention is directed generally to a genetic assay, and more particularly to a genetic assay for protein nuclear transport, including nuclear import and nuclear export.BACKGROUND OF THE INVENTION[0004]Throughout this application various publications are referenced, many in parenthesis. Full citations for each of these publications are provided at the end of the Detailed Description. The disclosures of each of these publications in their entireties are hereby incorporated by reference in this application.[0005]Nucleo-cytoplasmic shuttling of protein molecules is a basic biological process cent...

Claims

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Application Information

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IPC IPC(8): C07K14/195C07H21/00C07H21/04C12Q1/68
CPCC07H21/04C07K14/195C12Q1/6897C12Q2565/201
Inventor CITOVSKY, VITALY H.RHEE, YOON
Owner THE RES FOUND OF STATE UNIV OF NEW YORK
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