A pneumatic control unit of an excrement collecting system for a bullet train is mounted in a position close to the excrement collecting system, and comprises a mounting board, wherein a stop valve, a main filter pressure reducing valve, an adjusting valve A, an electromagnetic valve A, a transfer box pressure detection switch, a pressure regulating valve B, a transfer box pipeline valve control electromagnetic valve, a pressure detection switch B, an electromagnetic valve B and a non-return valve are mounted on the mounting board, and the stop valve, the main filter pressure reducing valve, the electromagnetic valve A, the electromagnetic valve B, the pressure detection switch B, the pressure detection switch B, a transfer box pipeline valve control electromagnetic valve set and a vacuum-pumping electromagnetic valve are controlled by an excrement collecting controller; after passing through the stop valve and the main filter pressure reducing valve through an air inlet, compressed gas is divided into four branches for supplying to all gas using units. According to the invention, a control unit is integrally mounted on a mounting board, the structure is compact, the occupied area is small, and the repair and maintenance are convenient.