The invention discloses a production method of a lotus root special fertilizer. The production method comprises the steps of organic fertilizer preparation, proportioning, pelleting and the like. As for the lotus root special fertilizer, according to the fertilizer requirement characteristic of lotus root growth, through compounding of an organic fertilizer and an inorganic fertilizer, the content proportion of nitrogen to phosphorus to potassium is reasonable, the lotus root special fertilizer contains organic matter and a medium quantity of or a trace of element fertilizers, nutrient elements needed by lotus root growth can be provided, meanwhile, the soil environment is improved, the content of the organic matter in soil is increased, the fertilizer utilization rate is increased, and accordingly the effect of increasing both production and income is achieved. After the lotus root special fertilizer is applied, the yield of lotus roots is increased by 20% or over, the production increasing effect is remarkable, and economic benefits are remarkable. In addition, the content of crude fibers of the lotus roots cultivated through the lotus root special fertilizer is low, the content of vitamin C and reducing sugar is high, and by applying the lotus root special fertilizer, a great effect of improving the quality of the lotus roots is achieved.