Method for extracting RNA from calcified tissue

A tissue and mixing technology, applied in the field of marine biology, can solve the problems of unclear RNA solution, failure, etc., and achieve the effects of good integrity, fast method and high yield

Inactive Publication Date: 2014-03-26
THIRD INST OF OCEANOGRAPHY STATE OCEANIC ADMINISTATION
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  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0008] Neither of these two methods can clearly know whether there is RNase residue in the RNA solution
If there is a very small amount of RNase in the solution, it is difficult to detect it with the above method, but most of the subsequent enzymatic reactions are performed above 37°C and for a long time
If there is a very small amount of RNase in the RNA solution, the RNase will have a very suitable environment and time to play their role in the subsequent experiment, which will lead to the failure of the experiment

Method used

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  • Method for extracting RNA from calcified tissue
  • Method for extracting RNA from calcified tissue
  • Method for extracting RNA from calcified tissue

Examples

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Effect test

Embodiment 1

[0034] Embodiment 1: the extraction of RNA

[0035] (1) Grinding tissue with liquid nitrogen: Knock off a piece of stinging star coral (a type of reef-building coral) and red gorgonian tissue from the coral reef with a hard object such as a hammer; cut them out with scissors treated with DEPC water and sterilized Put the hard scale layer on the surface of crucian carp scales in a mortar pre-cooled with liquid nitrogen, add a small amount of liquid nitrogen to crush it and grind it quickly. When the particles are smaller than 0.5cm, transfer the sample to a 2ml EP tube, first add 500ul Trizol, (the whole experiment needs to add 1ml Trizol according to 50-100mgRNA / ml Trizol, (see Trizol instruction manual, manufacturer: Shanghai Shining Crystal Institute of Molecular Biotechnology ).Use half of the amount of Trizol first, and make up the other half in (2), because the grinding time is long, add Trizol to prevent RNA degradation), add liquid nitrogen and continue to grind into ...

Embodiment 2

[0047] Use the Agilent 2100 Bioanalyzer (Model: Agilent G2939A, Manufacturer: Agilent) to measure the RNA concentration and integrity. The instrument manual indicates that the RNA integrity number (RIN) is greater than 7 and 28s / 18s is between 1-3. Good performance; use the Agilent RNA6000 Nano kit (Cat. No.: 5067-1511) to simulate the RNA gel electrophoresis pattern, with a sample volume of 1ul, the 28s and 18s bands of the simulated electrophoresis pattern are bright, clear, and sharp (referring to the The edge is clear), and the brightness of 28S is more than twice that of the 18S band, the quality of the RNA is considered to be good.

[0048] image 3 Agilent 2100 Bioanalyzer (Model: Agilent G2939A, Manufacturer: Agilent) detection results and Agilent RNA6000 Nano Kit (Cat. It can be seen from the figure that the RNA integrity value (RIN) is equal to 8.1, which meets the requirement that the integrity value (RIN) is greater than 7, and 28s / 18s is equal to 1.2, which meets...

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Abstract

The invention discloses a method for extracting RNA from a calcified tissue. The method comprises the following steps: grinding the calcified tissue in liquid nitrogen until the blocky particle diameter is less than 0.5cm, adding Trizol, then adding the liquid nitrogen to continue to grind into powder until the diameter is about 1mm or less than 1mm; then transferring the obtained powder into a RNase-Free tubule, adding the Trizol for cell digestion lysis; centrifuging the tubule, transferring a supernatant to a new tubular; adding chloroform into the supernatant for treatment, then centrifuging, transferring an topmost layer aqueous phase to another new tubular, adding a 75% ethanol solution, mixing gently for nucleic acid precipitation; then transferring to an adsorption column in a kit, standing then centrifuging for RNA to bind to the adsorption column; using a kit solution for washing; and then eluting to obtain the total calcified tissue RNA. The obtained total calcified tissue RNA has the advantages of high purity, high yield, good quality and good integrity.

Description

technical field [0001] The invention relates to marine biological technology, in particular to a method for extracting RNA from calcified tissues, in particular to a method for extracting ribonucleic acid RNA from reef-building corals. Background technique [0002] Calcification is the process by which calcium salts deposit in soft tissue and harden it. The extraction of total RNA from calcified cells in calcified tissues is usually the first step in molecular biology experiments such as transcriptome sequencing, expression profile sequencing, cDNA cloning, RT-PCR and Northern blot of calcified tissues. The quality and quantity of total RNA determine Success or failure and quality of follow-up experiments. At present, there are many reports on the methods of extracting total RNA from cultured bone cell lines and various organs, but the method of extracting total RNA from calcified tissues has been in the groping stage. The purity and yield of RNA obtained by traditional ex...

Claims

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Application Information

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IPC IPC(8): C12N15/10
Inventor 陈建明暨国彪郭辉革杨慧
Owner THIRD INST OF OCEANOGRAPHY STATE OCEANIC ADMINISTATION
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