New streptomyces strain as well as separation method and application thereof
A separation method, the technology of Streptomyces, applied in the field of microbial pharmacy, can solve problems such as human health hazards, antibiotic resistance, and increased resistance of pathogens, and achieve the effect of enriching the production capacity of natural products
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Embodiment 1
[0037] Embodiment 1: Isolation, identification and preservation of bacterial strains of the present invention
[0038] (1) Separation
[0039] Add 1 g of soil samples collected from Ningxia saline-alkali land (longitude 106°08', latitude 38°38') and appropriate amount of glass beads to 9 mL of sterile water, shake for 10 min, and let stand for 30 s to make a soil stock solution (at this time, the dilution is recorded as 10 -1 ). Take 1 mL of the supernatant of the soil stock solution and add it to a test tube filled with 9 mL of sterile water and mix well (the dilution is 10 at this time).-2 ), draw 1mL from this test tube and add it to another test tube filled with 9mL sterile water, mix well, and make a dilution by analogy (the dilution is 10 -4 ).
[0040] Use a pipette gun to draw 100 μL of diluents of different dilutions and evenly spread them on the Gaoshi No. 1 solid medium added with 100 mg / L sterile potassium dichromate, culture at 28°C for 5-7 days, and observe th...
Embodiment 2
[0052] Example 2: Determination of the whole genome of Streptomyces Ⅱ-2-2-2
[0053] (1) Streptomyces II-2-2-2 was inoculated into sterilized Bennett's liquid medium, and cultured on a shaker at 28° C. and 220 rpm for 48 hours.
[0054] (2) Centrifuge the bacterial solution, wash the precipitate with PBS buffer for 2-3 times, transfer the precipitate to a 1.5mL sterile cryopreservation tube until the bacterial precipitate reaches a height of 0.5mL, and enrich to obtain Streptomyces Ⅱ-2- The whole genome of Streptomyces Ⅱ-2-2-2 was detected, and some genes were annotated.
[0055] Genome-wide detection results: The final assembled genome of Streptomyces II-2-2-2 consists of a 4409970bp linear DNA chromosome with a G+C content of 66.43%, including 3974 predicted coding genes, 72 tRNA and 10 rRNA genes . cgview of the whole genome of Streptomyces II-2-2-2 as Figure 5 shown.
Embodiment 3
[0056] Example 3: Annotation of Streptomyces II-2-2-2 secondary metabolite synthesis gene cluster
[0057] The complete genome sequence of Streptomyces II-2-2-2 was annotated with gene clusters involved in secondary metabolite biosynthesis using antiSMASH 6.0.2. AntiSMASH functional analysis found that Streptomyces II-2-2-2 had five gene clusters involved in the synthesis of secondary metabolites, including LAP, RiPP-like, NRPS, Lanthinipeptides and Arylpolyene. Annotation of Streptomyces II-2-2 secondary metabolite biosynthesis gene cluster as Figure 6 shown.
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