Fluorescent quantitative RT-PCR detection kit for feline infectious peritonitis virus
A peritonitis virus, detection kit technology, applied in the direction of viruses, viral peptides, viruses/phages, etc., to achieve the effects of convenient sampling, simple and easy operation procedures, and high detection efficiency
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Embodiment 1
[0027] Four sets of primers and TaqMan probes are designed according to the full sequence of the N gene of the feline infectious peritonitis virus, as follows:
[0028] F3:5’-AGAAGCCTGAGGAATTGTCTGT-3’(SEQ ID NO:8)
[0029] R3:5’-TCGTAACCTCATCAATCATCTCA-3’(SEQ ID NO:9)
[0030] P3:5’-(FAM)CACAGATGTGTTTGATGACACACAGGT-3’(TAMRA)(SEQ ID NO:10)
[0031] F4:5’-CCAACAACACTTGGCACTCG-3’(SEQ ID NO:11)
[0032] R4:5’-CCAGCTTCTTCAGCAGACCA-3’(SEQ ID NO:12)
[0033] P4:5’-(FAM)CGTTGCCAATGGTAACGCTGCC-3’(TAMRA)(SEQ ID NO:13)
[0034] F5:5’-TTGTCAGAGGCCAGCGTAAG-3’(SEQ ID NO:14)
[0035] R5:5’-TTCCACGAGTGCCAAGTGTT-3’(SEQ ID NO:15)
[0036] P5:5’-(FAM)GGGTTGCAAGGGATGGAGCCA-3’(TAMRA)(SEQ ID NO:16)
[0037]F6:5’-CGGTCTAACTCTCGTGGTCG-3’(SEQ ID NO:17)
[0038] R6:5’-AAGTTCCTTACGCTGGCCTC-3’(SEQ ID NO:18)
[0039] P6:5’-(FAM)ACAGACAGGTGCGTTACCGCA-3’(TAMRA)(SEQ ID NO:19)
[0040] After fluorescence quantitative RT-PCR detection, the above four sets of primers and TaqMan probes detected a large number of cli...
Embodiment 2
[0042] Look for conserved areas of the N gene of feline infectious peritonitis virus; Design synthetic primers and TaqMan probes
[0043] According to the N gene sequence of cat infectious peritonitis virus published by GenBank (AB086903.1, FJ917524.1, A22378.1, FJ917535.1, AB0866881.1, FJ943764.1, FJ917533.1, FJ917532.1, FJ917530.1, FJ917529.1), its conserved region was analyzed, A specific conserved sequence of the N gene of cat infectious peritonitis virus (SEQ IDNO:1) was obtained:
[0044] ATGGCCACACAGGGACAACGCGTCAACTGGGGAGATGAACCTTCCAAAAGACGTGGTCGTTCTAACTCTCGTGGTCGGAAGAATAGTAATATACCT。
[0045] The primer design for this conservative sequence was obtained with two pairs of specific primers and two Taqman probes, the 5' end of the probe fluorescence reporting group is FAM, and the 3' end of the fluorescent quenching group is TAMRA.
[0046] Both the specific detection primer and the Taqman probe are synthesized by Baori Medical Biotechnology Co., Ltd.
[0047] The primers and ...
Embodiment 3
[0055] Quantitative construction and preparation of standard plasmids
[0056] 1. Construction of quantitative standard plasmids
[0057] Depending on the PCR primer designed, genes containing amplified fragments of interest are cloned into plasmid vector pUC57 using recombinant DNA techniques and DNA sequence assays are performed. The recombinant plasmid constructed serves as a quantitative standard plasmid for detecting infectious peritonitis virus in cats, named pUC57-FIPV-N ( Figure 1 )。 Recombinant plasmids are synthesized by Kinko Biotech.
[0058] 2. Preparation of quantitative standard plasmids
[0059] The standard plasmid pUC57-FIPV-N is extracted and purified by alkali cracking, the concentration is determined by a trace nucleic acid protein analyzer, and the copy number is calculated by formula (copy number = 6.02×10 23 × DNA concentration / mass MW, MW = DNA base number ×330), the standard plasmid copy number is calculated to be 3.4x10 11 copies / μL, store at -20 °C.
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