One-stop PCR (Polymerase Chain Reaction) method

A station type, dye mixture technology, applied in the field of molecular biology, can solve problems such as harm to the health of experimenters, low PCR amplification efficiency, consumption of large time and energy, etc., to achieve simple and easy preparation, improve efficiency and sensitivity. , the effect of reducing operation time

Inactive Publication Date: 2012-08-08
WUHAN UNIV
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

As an important conventional molecular biology technology, PCR often encounters the following problems in practical application: (1) the amplification efficiency of PCR reaction is not high enough; (2) the sensitivity of PCR amplification is limited; (3) in the When conducting experiments such as large-scale library screening, the step of adding sample buffer and mixing samples will consume a lot of time and energy; (4) dyes used for nucleic acid staining such as EB, SYBR Green, etc. are toxic, not only directly endangering the experiment The health of personnel also causes different degrees of environmental pollution (Huang, Q., and Fu, W.L. Comparative analysis of the DNAstaining efficiencies of different fluorescent dyes in preparative agarose gelelectrophoresis. Clin Chem Lab Med 2005, 43, 841-842. )

Method used

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Examples

Experimental program
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Effect test

Embodiment 1

[0045] Embodiment 1, the preparation (100ml) of 5 * compatible dye mixture

[0046] (1) Add 80ml of PCR grade pure water to a clean beaker;

[0047] (2) Weigh 10g of Ficoll 400 dry powder, add it into the above pure water, pay attention to mixing with a magnetic stirrer while adding, do not make Ficoll 400 agglomerate, otherwise it will affect the sedimentation effect of subsequent spotting;

[0048] (3) Take by weighing 0.02g cresol red, join in the solution of step (2), magnetic stirring aids dissolution;

[0049] (4) Take by weighing 0.08g tartrazine, join in the solution of step (3), magnetic stirring aids dissolution;

[0050] (5) Put the solution in step (4) in a 70°C incubator and heat it at a high temperature to help dissolve it for 1 hour. During this period, shake vigorously every 10 minutes or so. At this time, you can see that the solution is transparent yellow-red, which is normal color;

[0051] (6) After the solution in step (5) is taken out and cooled, add a...

Embodiment 2

[0057] Example 2, 2×PCR master mixture preparation

[0058] The 2×PCR master mixture was prepared, and the ingredients and dosage are shown in the table below:

[0059] 5× compatible dye mix 4ul

[0060] 10×reaction buffer 2ul

[0061] dNTP (10mmol / l each) 0.5ul

[0062] Taq DNA polymerase (5units / ul) 0.2ul

[0063] PCR grade pure water 3.3ul

[0064] Total volume 10ul

[0065] Mix the components sequentially according to the order in the above table, and the preparation can be scaled up in proportion.

[0066] Among them, Taq DNA polymerase, dNTP, and 10× reaction buffer were purchased from Shanghai Shenergy Biotechnology Co., Ltd.

[0067] The 2×PCR main mixture can be divided into 1.5ml centrifuge tubes, 1ml / tube, and can be stored at -20°C for a long time under dark conditions. The normal color of the 2X PCR master mix is ​​dark red.

Embodiment 3

[0068] Example 3 One-stop PCR does not affect the electrophoretic mobility of the product ( figure 1 )

[0069] (1) Using human Hela cell cDNA as a template (prepared with 2 μg total RNA), amplify 0.1kb, 0.2kb, 0.3kb, 0.4kb, 0.5kb, 0.75kb fragments of β-actin cDNA. The preparation of the reaction system is as follows:

[0070] 2×PCR Master Mix 10ul

[0071] Upstream primer (10uM) 0.5ul

[0072] Downstream primer (10uM) 0.5ul

[0073] Template cDNA 1μl

[0074] Water 8ul

[0075] Total volume 20ul

[0076] (2) The reaction conditions are:

[0077] Pre-denaturation at 94°C for 2 minutes

[0078]

[0079] 72℃ 5min total extension

[0080] (3) After the PCR reaction, 5 μl of the product was taken and detected by electrophoresis on 2% agarose gel.

[0081] Depend on figure 1 The results showed that one-stop PCR had no effect on the electrophoretic mobility of PCR products.

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Abstract

The invention relates to a novel PCR (Polymerase Chain Reaction) reaction method belonging to the field of biochemistry and molecular biology. The novel PCR reaction method sequentially comprises the following steps of: (1) preparing a compatible dye mixture, wherein the compatible dye mixture comprises ficoll 400, cresol red, lemon yellow and Gelred; (2) preparing a PCR principal mixture, wherein the PCR principal mixture comprises the compatible dye mixture, dNTP (Deoxy-ribonucleoside Triphosphate), a Taq DNA polymerase and a reaction buffer solution; (3) configuring a PCR reaction system; (4) setting and operating PCR reaction conditions; and (5) detecting PCR products. The novel PCR reaction method realizes the direct point sample electrophoresis and the immediate dyeing after PCR reaction; besides, the novel PCR reaction method uses a nontoxic nucleic acid dye and has low cost and high efficiency without toxicity; the obtained PCR products can be used for directly carrying out multiple downstream operations, such as ethanol precipitation, silica gel membrane product purification, and the like; and in addition, the novel PCR reaction method is suitable for the research of geneexpression detection related to PCR, gene clone, and other aspects.

Description

technical field [0001] The invention relates to a new method for nucleic acid amplification and detection, which belongs to the technical field of molecular biology. Background technique [0002] Polymerase chain reaction (polymerase chain reaction, PCR) has been invented by Dr. Karry Bank Mullis, an American scientist and Nobel Prize winner in chemistry since 1990 (Mullis, K.B.1990. The unusual origin of the polymerase chain reaction. Sci Am 262, 56- 61.), because it can achieve exponential replication of target gene fragments in a short period of time, it has now become the most important means of in vitro nucleic acid amplification, and is widely used in various fields of biological research. [0003] On the basis of the "PCR" concept proposed by Dr. Mullis, scientists have explored and developed dozens of PCR derivative technologies, such as recombinant PCR, asymmetric PCR, in situ PCR, etc., which greatly facilitate biological researchers Carry out various research act...

Claims

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Application Information

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Patent Type & Authority Patents(China)
IPC IPC(8): C12Q1/68
Inventor 毕延震张嘉农马钧
Owner WUHAN UNIV
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