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SRDA isothermal nucleic acid amplification reagent kit and application thereof

A kit and exonuclease technology, applied in biochemical equipment and methods, microbial measurement/inspection, microorganisms, etc., can solve the problems of different modified bases and detection platforms, complex operations, misjudgment, etc., and achieve enhanced Effect of isothermal amplification efficiency and improvement of detection sensitivity

Pending Publication Date: 2020-01-03
深圳市艾伟迪生物科技有限公司
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

Among them, although LAMP and SAT no longer rely on expensive detection instruments, the operation is more complicated, and the amplification time still takes about 1 hour; RPA, as the recognized isothermal nucleic acid amplification technology with the shortest detection time and the most convenient operation, does not rely on Bulky and expensive fluorescent quantitative detection equipment, the reaction time is only 5-20 minutes, has become a hot research topic at home and abroad
[0004] RPA technology was first introduced by the British Twist DX company, and the products currently on the market are mainly the RPA isothermal nucleic acid detection kit of the British TwistDX company and the RAA isothermal nucleic acid amplification detection kit produced by China Hangzhou Zhongce Biotechnology Co., Ltd. However, their kits need to use two different systems for DNA and RNA detection, and at the same time, the sensitivity for RNA amplification is low, only about 1000copies / μL
[0005] CN 105525040 A discloses a real-time fluorescent RPA kit for rapid detection of porcine type 2 circovirus, a test strip RPA kit and uses thereof, the two kits respectively include those shown in SEQ ID NO.1 and SEQ ID NO.2 The primers and their respective probes, although aimed at the same target sequence, the modified bases and detection platforms of the primers and probes are different, and the experiments show that the sensitivity of the two kits of the present invention is 10 2 copy / reaction, and both can only specifically detect porcine type 2 circovirus, and the coincidence between the detection results and qPCR is 100%. The two kits can detect porcine type 2 circovirus quickly, efficiently and sensitively. Circovirus provides an effective technical means for the differential diagnosis of porcine type 2 circovirus, but the test kit adopts the method of test strips, and the result is judged by the brightness of the strip, so the judgment of the result is easily caused by the subjectivity of the experimenter. cause of misjudgment
[0006] CN 107828913 A discloses a RAA constant temperature fluorescence detection method and kit for white spot syndrome (WSSV) of prawns. The detection kit includes a forward primer SEQ ID NO.1, a reverse primer SEQ ID NO.2, and a specific fluorescent Probe SEQ ID NO.3, reaction solution, recombinant polymerase and reference substance; the kit has strong specificity, high detection sensitivity, which can reach 0.1fg / μL, high accuracy, reliability, simple and fast operation, and is suitable for on-site detection , has a wide range of application scenarios, but the kit also cannot be used for RNA detection

Method used

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  • SRDA isothermal nucleic acid amplification reagent kit and application thereof
  • SRDA isothermal nucleic acid amplification reagent kit and application thereof
  • SRDA isothermal nucleic acid amplification reagent kit and application thereof

Examples

Experimental program
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Effect test

Embodiment 1

[0094] The design, synthesis and screening of embodiment 1 primer probe

[0095] In order to comprehensively evaluate the SRDA isothermal nucleic acid amplification kit of the present invention, this embodiment uses the DNA-based Brucella gene and the RNA-based canine distemper virus gene as target genes, and designs specific primers and probes respectively. Screening experiment, obtain the optimal primer probe combination of amplification brucella gene SEQ ID NO:8 and canine distemper virus gene SEQ ID NO:9, wherein, brucella primer such as SEQ ID NO:2~3 As shown, the probe is shown in SEQ ID NO: 6, the canine distemper virus primer is shown in SEQ ID NO: 4-5, and the probe is shown in SEQ ID NO: 7.

[0096] The amplification curve (Amplification Plot) such as figure 1 and figure 2 as shown, figure 1 It is the amplification result graph of Brucella positive standard products amplified by 6 different primer probe groups for Brucella, figure 1 (1-1) is the best embodiment ...

Embodiment 2

[0097] Example 2 AGO protein screening experiment

[0098] AGO proteins from different sources, specifically NgAgo (Natronobacterium gregoryi), MjAgo (Methanocaldococcus jannaschii), TtAgo (Thermus thermophilus), PfAgo (Pyrococcus furiosus) and NpAgo (Natrinema pellirubrum), were added to the detection system to screen for the best AGO protein.

[0099] structured as image 3 As shown, NgAgo(F1), MjAgo(F2), TtAgo(F3), PfAgo(F4) and NpAgo(F5) have significant enhancement effects on the detection sensitivity of SRDA, among which, NgAgo has the most significant enhancement effect and the highest sensitivity.

Embodiment 3

[0100] Example 3 SRDA isothermal nucleic acid amplification for detection of DNA and RNA

[0101] (1) Preparation of standard samples

[0102] The DNA plasmids respectively containing the Brucella target gene (DNA) and the canine distemper virus target gene (RNA) were synthesized by Shanghai Sangong Bioengineering Co., Ltd.; wherein, the Brucella positive standard was the Brucella plasmid The canine distemper virus standard is obtained after direct dissolution and dilution. The canine distemper virus plasmid is firstly reverse-transcribed into RNA using the in vitro transcription kit of Thermo Company, and then obtained after dissolution and dilution;

[0103] (2) Gradient dilution of positive standard samples

[0104] The prepared Brucella positive standard and canine distemper virus positive standard were respectively subjected to 10-fold gradient dilution, specifically:

[0105] Brucella Positive Standard: S1: 5×10 5 copies / μL, S2: 5×10 4 copies / μL, S3: 5×10 3 copies / μ...

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Abstract

The invention provides an SRDA isothermal nucleic acid amplification reagent kit and an application thereof. The reagent kit comprises a protein composition, wherein the protein composition comprisesrecA recombinase, Ago protein, single-stranded DNA conjugated protein and strand displacement DNA polymerase. The reagent kit further comprises reverse transcriptase. The Ago protein is added, so thatthe isothermal amplification efficiency is significantly improved; and the reverse transcriptase is added, so that general-purpose detection of DNA and RNA is realized. The reagent kit disclosed by the invention is good in detection specificity and high in sensitivity, the sensitivity of amplifying the DNA reaches 50copies / [mu]L, the sensitivity of amplifying the RNA reaches 100copies / [mu]L, andthe reagent kit has extremely high theoretical value and clinical application value.

Description

technical field [0001] The invention belongs to the technical field of biological detection, and relates to an SRDA isothermal nucleic acid amplification kit and an application thereof. Background technique [0002] At present, commonly used nucleic acid detection methods mainly include classical PCR, real-time fluorescence quantitative PCR, gene chip and isothermal nucleic acid amplification technology, etc. Among them, as the gold standard of nucleic acid detection, classical PCR has the widest application range and the longest use time, and is the basis of various emerging nucleic acid detection methods, but there are problems such as insufficient specificity and easy contamination; The nucleic acid amplification method developed on the basis of PCR and capable of real-time monitoring of the PCR process has better specificity and sensitivity than classical PCR, and has become the most widely used nucleic acid quantitative technology in the nucleic acid diagnostic industry...

Claims

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Application Information

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IPC IPC(8): C12Q1/6844C12Q1/689C12Q1/70C12R1/01C12R1/93
CPCC12Q1/6844C12Q1/689C12Q1/701C12Q2531/119C12Q2521/507C12Q2521/107C12Q2522/101C12Q2527/127
Inventor 李泓彦邓春兴李荣华刘涛涛吴玉峰
Owner 深圳市艾伟迪生物科技有限公司
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