DPO RT-PCR primer group, detection method and kit for synchronously detecting five citrus viruses and application of DPO RT-PCR primer group, detection method and kit

An OPORT-PCR, simultaneous detection technology, applied in microorganism-based methods, biochemical equipment and methods, DNA/RNA fragments, etc., can solve the problems of dead, chlorosis, frequent seedling transportation, etc., and achieve high sensitivity and accuracy. High precision, simple and efficient detection method

Pending Publication Date: 2022-07-26
GUANGXI ZHUANG AUTONOMOUS REGION ACAD OF AGRI SCI
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0002] With the continuous expansion of citrus planting area and the introduction of new varieties, the transfer of seedlings between regions is frequent; due to the difficulty of supervision, various diseases and insect pests are spread through seedlings and cause serious damage, among which viral diseases are particularly prominent
[0003] Citrus tristezavirus (CTV) causes symptoms such as citrus tree vigor decline, branch stem depression, and fruit shrinkage; Citrus tatter leafvirus (CTLV) causes plant yellowing and weakness, and in severe cases, the whole plant dies; Citrus exocortis viroid (CEVd) diseased trees are dwarfed, with few and weak new shoots, small leaves and most of them show symptoms of zinc deficiency, and the diseased trees have many flowers, but severe flower and fruit drop, and low yield; citrus yellow vein bright virus (Citrus yellow vein clearing virus, CYVCV) can infect most citrus species such as lemons, limes, and sweet oranges, and can cause varying degrees of vein brightening, chlorosis, and mosaic symptoms, and can cause severe leaf rolling in sugar oranges; After Citrus leaf blotchvirus (CLBV) infects citrus plants, it can cause citrange or pomelo as the scion on the rootstock to combine abnormally. The incompatibility between the scion of citrus and the rootstock will directly endanger the growth of citrus trees. This in turn causes significant economic losses to the citrus industry.

Method used

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  • DPO RT-PCR primer group, detection method and kit for synchronously detecting five citrus viruses and application of DPO RT-PCR primer group, detection method and kit
  • DPO RT-PCR primer group, detection method and kit for synchronously detecting five citrus viruses and application of DPO RT-PCR primer group, detection method and kit
  • DPO RT-PCR primer group, detection method and kit for synchronously detecting five citrus viruses and application of DPO RT-PCR primer group, detection method and kit

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0034] Example 1 Primer Design

[0035] Based on the whole genome sequences of citrus decay virus, citrus leaf chipping virus, citrus split peel virus, citrus yellow veining virus, and citrus leaf mottle virus published by NCBI, DPO RT-PCR primers for simultaneous detection of these five viruses were designed.

[0036] Citrus decay virus (accession numbers: AF001623, AF260651, AY170468, FJ525436, JQ965169, etc.), citrus leaf fragmentation virus (accession numbers: AY646511, EU553489, MH108985, KC588948, KY706358, etc.), citrus split virus (accession numbers: DQ44444, etc.) M30870, S67437, M30868, etc.), all pathogenic types of citrus yellow veining virus (accession numbers: KT124646, KX156742, MK415924, MF563877, etc.), citrus leaf mottle virus (accession numbers: EU857539, MT863785, MG572236, MN495980, etc.) The whole genome sequence is compared and analyzed, and the conserved sequences between different pathogenic types of the same virus and the gene sequences with large dif...

Embodiment 2

[0050] Example 2 Construction of plasmid

[0051] Using the specific primers designed in Example 1, the target fragments were amplified from the collected samples of citrus and citrus decay virus, citrus leaf fragmentation virus, citrus split peel virus, citrus yellow veining virus, and citrus leaf mottle virus. The gel recovery kit recovered and purified the amplified fragment, ligated it with the pMDT-20T vector, and then transformed it into E. coli DH5α competent cells for cultivation, and carried out colony PCR verification to verify the correct colony, and sent the bacterial solution to Shanghai Biotechnology Co., Ltd. Engineering Bioengineering Co., Ltd. The colonies with the correct sequencing results were compared and the plasmids were extracted to obtain the recombinant plasmids pCEV, pCTV, pCLBV, pCTLV and pCYVCV. Then, the concentration of plasmid DNA was measured with a nucleic acid protein analyzer to determine the concentration of sample DNA, and the concentrati...

Embodiment 3

[0054] Example 3 Effects of different annealing temperatures on the detection results of single-plex PCR

[0055] Dilute 10 with cloned recombinant plasmid 2 times as a template for PCR amplification. The PCR reaction system was 20 μL: PremixEx TaqTM 10 μL, the final concentration of upstream and downstream primers was 0.50 μmol / L, the plasmid DNA template was 1 μL, and ddH2O supplemented 20 μL. The PCR reaction parameters were: pre-denaturation at 94°C for 2 min; denaturation at 94°C for 30s, annealing at 48-62°C for 30s, extension at 72°C for 1 min, 35 cycles; final extension at 72°C for 10min, cooling to 12°C to complete the reaction.

[0056] Other conditions remained unchanged, the annealing temperature was screened, and 8 treatments were set: 48°C, 50°C, 52°C, 54°C, 56°C, 58°C, 60°C, and 62.0°C.

[0057] PCR product electrophoresis detection: Mix 6μL of PCR product with 1μL of 6× loading buffer, and perform electrophoresis on a 1.2% agarose gel (with Goldview nucleic a...

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Abstract

The invention discloses a DPO RT-PCR (Reverse Transcription-Polymerase Chain Reaction) primer group for synchronously detecting five citrus viruses, a detection method, a kit and application of the DPO RT-PCR primer group. The sequences of the primer group are shown as SEQ ID NO.1-SEQ ID NO.10. The invention further discloses a kit for synchronously detecting the five citrus viruses. Specific DPORT-PCR primers are designed for the citrus tristeza virus, the citrus shatter leaf virus, the citrus shatter peel virus, the citrus yellow vein clearing virus and the citrus leaf mottle virus, the detection primers can effectively remove primer dimer interference, the five viruses can be detected from a sample at the same time, the detection method is simple, convenient and efficient, and the detection time is short. The method can be used for detection only by using a common PCR instrument and an electrophoresis apparatus, has the characteristics of rapidness, economy, high accuracy and high sensitivity, can be used for large-scale screening of field citrus plants and epidemic prevention detection before seedling transportation, and provides technical support for healthy seedling detection and field screening of diseases.

Description

technical field [0001] The invention belongs to the technical field of plant virus detection, and in particular relates to a DPORT-PCR primer set, a detection method, a kit and an application for synchronous detection of five citrus viruses. Background technique [0002] With the continuous expansion of citrus planting area and the introduction and cultivation of new varieties, the transfer of seedlings between regions is frequent; due to the difficulty of supervision, various diseases and insect pests are carried and spread through seedlings and cause serious harm, among which viral diseases are particularly prominent. [0003] Citrus tristezavirus (CTV) causes citrus tree vigor decline, shoots and stems sink, fruit becomes smaller and other symptoms; The diseased trees of Citrus exocortis viroid (CEVd) are dwarfed, the new shoots are few and weak, the leaves are small and most of them are zinc-deficient, the diseased trees have many flowers, but the flowers and fruits are ...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/70C12Q1/686C12N15/11C12R1/94
CPCC12Q1/701C12Q1/686C12Q2600/16C12Q2521/107C12Q2565/125C12Q2537/143
Inventor 李战彪莫翠萍谢慧婷崔丽贤陈锦清林林罗婉笛李金哲蔡健和秦碧霞
Owner GUANGXI ZHUANG AUTONOMOUS REGION ACAD OF AGRI SCI
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