The present invention presents embodiments of methods, systems, and computer-readable media for advanced computer file organization, computer file and web search and information retrieval, and intelligent assistant agent to assist a user's creative activities. The embodiments presented herein categorize search results based on the keywords used in the search, provide user selectable ranking, use user's search objectives and advices to refine search, conduct search within an application program and using a file based, provide always-on search that monitors changes over a period of time, provide a high level file system that organizes files into categories, according to relations among files, and in ranking orders along multiple categorization and ranking dimensions and multiple levels of conceptual relationships, conduct searches for associations between keywords, concepts, and propositions, and provide validations of such associations to assist a user's creative activity.