The invention relates to a mussel processing system. The mussel processing system comprises a feeding mechanism, a kneading apparatus, a cleaning apparatus, a grading apparatus, a cooking apparatus, avibrating and discharging apparatus, a shell-flesh separating apparatus, an unhairing apparatus and a mussel mouth opening apparatus, wherein byssus, sand and bur on the surface of the mussels are separated from the mussel shell by utilizing the kneading apparatus, the kneaded mussels are guided into the cleaning apparatus to be cleaned, so that separated mussels with clean surface can be obtained, the separated mussels having clean surfaces are guided into the grading apparatus to be graded according to the size, the graded mussels are separately guided into the cooking apparatus to be cooked to make the mussels open, and the opened mussels are guided into the vibrating and discharging apparatus, so that the opened mussels are separately guided into the shell-flesh separation apparatus,the flesh in the opened mussels is separated from the mussel shell, so as to obtain the mussel flesh, and the mussel flesh is dried to obtain dry mussel flesh; and by adopting the mussel processing system, the efficiency of separating the flesh and shell can be improved, and the completeness of the mussel flesh can be ensured at the same time.