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Anchoring method of target biomolecule, expansion microscopic imaging method and application thereof

A technology of biomolecules and labeled molecules, which is applied in the direction of analyzing materials, material excitation analysis, and material analysis through optical means, so as to achieve the effect of facilitating expansion microscopic imaging

Active Publication Date: 2021-05-21
PEKING UNIV
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0009] The main purpose of the present invention is to provide an anchoring method for target biomolecules, an expansion microscopic imaging method and its application, to solve the problem that there is no suitable method in the prior art that can utilize ExM for certain biomolecules (such as some lipids) The problem of fluorescent labeling and super-resolution imaging

Method used

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  • Anchoring method of target biomolecule, expansion microscopic imaging method and application thereof
  • Anchoring method of target biomolecule, expansion microscopic imaging method and application thereof
  • Anchoring method of target biomolecule, expansion microscopic imaging method and application thereof

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Experimental program
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Effect test

Embodiment 1

[0130] 1. The purpose of the experiment: Using the existing ExM method, it is proved that biomolecules such as lipids cannot be imaged by the existing ExM method.

[0131] 2. Experimental steps:

[0132] Primary hippocampal neurons and HeLa cells were labeled with alkynyl-choline, alkynyl-palmitic acid, alkynyl-farnesol, and the fat-soluble dye DiI, followed by ExM imaging.

[0133] ExM imaging procedure: samples were labeled with 0.1 mg / mL AcX overnight at room temperature, or cross-linked with 0.25% glutaraldehyde for 15 minutes. Prepare a monomer solution (1×PBS, 2M NaCl, 2.5% acrylamide, 0.15% N,N'-methylenebisacrylamide, 8.625% sodium acrylate), and add the newly prepared 10% tetramethylethylene Amine (TEMED) and 10% ammonium persulfate (APS), the cells were first incubated at 4°C for 5 minutes, and then placed in a 37°C incubator to incubate the gel for one hour. The gel was then digested with 8 U proteinase K in digestion buffer (50 mM Tris pH 8.0, 1 mM EDTA, 0.1% Tri...

Embodiment 2

[0137] 1. The purpose of the experiment: to prove that the streptavidin-based click-ExM method can be used to anchor biomolecules such as lipids by means of mass spectrometry, protein gel electrophoresis, and fluorescence imaging.

[0138] 2. Experimental steps:

[0139] 1) Streptavidin and biotin were co-incubated overnight, followed by MALDI mass spectrometry.

[0140] 2) For the proteinase K digestion experiment, the complex of streptavidin and biotin was incubated with proteinase K for different times, and the coomassie brilliant blue imaging of the protein gel was performed.

[0141] 3) For HeLa cell metabolic labeling of alkynyl-choline, respectively click on the organic dye tetramethylrhodamine (TAMRA) or Alexa Fluor 555-labeled streptavidin, after fixation, use methanol, Triton-X100, ethanol / 10% formamide, 10% SDS for treatment.

[0142] 3. Experimental results:

[0143] like Figure 4 shown in a to f, where, Figure 4 a shows the crystal structure of streptavidin....

Embodiment 3

[0145] 1. Experimental purpose: Through the immunofluorescence experiment on tubulin, it is proved that signal amplification can be achieved based on the iterative interaction between streptavidin and biotin trimer.

[0146] 2. Experimental steps:

[0147] Synthetic route of biotin trimer: 10mg biotin-PEG 3 -Amines were placed in 100 μL dimethylformamide, to which 100 μL 1,3,5-benzenetricarboxylic acid tris-(2,3,5,6-tetrafluorophenyl)ester was added ) (concentration is 0.474mg mL -1 ), stirred at room temperature overnight, and the solvent was removed by rotary evaporation. The product was purified by silica gel column (methanol:ethyl acetate from 1:100 to 3:7) to give the product as white solid (7 mg, 68%).

[0148] Its NMR test data are: 1 H NMR (500MHz, CD3OD3)8.45(s,3H),4.84(s,9H),4.50-4.46(m,3H),4.30-4.27(m,3H),3.70-3.56(m,36H),3.51- 3.48(m,6H),3.33-3.29(m,9H),3.19-3.15(m,3H),2.93-2.88(m,3H),2.69(d,J=10.5Hz,3H),2.21-2.16( m,6H), 1.74-1.53(m,12H), 1.44-1.37(m,6H).

...

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Abstract

The invention provides an anchoring method of a target biomolecule, an expansion microscopic imaging method and application thereof. The anchoring method comprises the following steps: marking the target biomolecule, so that the target biomolecule carries an amino group and a signal mark; and making the target biomolecule anchored into the gel using the amino group. The target biomolecule is labeled with the amino group and the signal mark, so that the target biomolecule with the amino group can be labeled with the mark signal, and the target biomolecule without the amino group, such as lipid or carbohydrate, can be labeled with the amino group at the same time; further, the target biomolecule is anchored into the gel through the amino group by adopting an existing anchoring method, so that the gel anchoring of any type of biomolecule is realized, and the subsequent expansion microscopic imaging is conveniently realized.

Description

technical field [0001] The invention relates to the field of biomarkers, in particular to an anchoring method for target biomolecules, an expansion microscopic imaging method and applications thereof. Background technique [0002] ExM technology was developed by Edward S. Boyden group in 2015. The specific implementation process is to use sodium acrylate, copolymerization agent acrylamide and cross-linking agent N,N-methylenebisacrylamide to penetrate into the interior of the biological sample and carry out free radical polymerization therein. After moderate protease digestion or high-temperature deformation, the mechanical homogenization of the sample is made, and the polyelectrolyte gel with a large number of carboxylate groups expands due to electrical repulsion after absorbing water, making the biomolecules anchored in the gel can expand isotropically (e.g. figure 1 shown). [0003] In ExM technology, how to anchor biomolecules into the gel is crucial. At present, th...

Claims

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Application Information

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IPC IPC(8): G01N21/64G01N33/532G01N33/533
CPCG01N21/6428G01N21/6458G01N33/532G01N33/533G01N2021/6441
Inventor 陈兴孙德恩
Owner PEKING UNIV
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