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Tricarboxylic acid cycle-free Escherichia coli chassis bacteria as well as construction method and application thereof

An Escherichia coli, tricarboxylic acid-free technology, applied in the biological field, can solve problems such as aerobic growth limitation, complicated process, and difficult industrial application, and achieve the effects of improving enzyme catalytic efficiency, reducing carbon loss rate, and promoting synthesis

Pending Publication Date: 2021-12-21
INST OF MICROBIOLOGY - CHINESE ACAD OF SCI
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

If the α-ketoglutarate dehydrogenase gene (sucA) and the isocitrate lyase gene (aceA) are knocked out at the same time, or the sucA is knocked out, the metabolism of the tricarboxylic acid cycle is disrupted, which often leads to slow growth of the strain, especially in inorganic Aerobic growth on glucose as sole carbon source is limited in salt-based media
At present, there are two main strategies to solve: one is to dynamically regulate the expression of α-ketoglutarate dehydrogenase gene (sucA), and to perform switch regulation in cell growth and synthesis of target products. The regulatory elements are too complex, which often affects the synthesis pathway of the target product, and the process is complicated and difficult for industrial application; the second is to use α-ketoglutarate-dependent dioxygenase to reconstruct the tricarboxylic acid cycle, and combine the production and engineering of the target product It is associated with the growth of bacteria, which has high requirements for the activity of α-ketoglutarate-dependent dioxygenase, and is not suitable for the production of products with certain cytotoxicity

Method used

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  • Tricarboxylic acid cycle-free Escherichia coli chassis bacteria as well as construction method and application thereof
  • Tricarboxylic acid cycle-free Escherichia coli chassis bacteria as well as construction method and application thereof
  • Tricarboxylic acid cycle-free Escherichia coli chassis bacteria as well as construction method and application thereof

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0112] Embodiment 1, construct the Escherichia coli chassis bacterium that can grow in inorganic salt basal medium without tricarboxylic acid cycle

[0113] 1. Construction of Escherichia coli chassis bacteria without tricarboxylic acid cycle

[0114] 1. PCR amplification to obtain the erasable resistance gene selection marker element lox71-kanR-lox66

[0115] The plasmid pKD13 (GenBank: AY048744.1) was used as a template, and the primer pair composed of primer P1 and primer P2 was used for PCR amplification to obtain the selection marker element lox71-kanR-lox66 carrying the kanamycin resistance gene. Among them, the sequence of lox71 was introduced by primer P1, the sequence of lox66 was introduced by primer P2, and the size of the PCR fragment was about 1300bp, which was consistent with the target fragment.

[0116] 2. In vitro assembly of the targeting fragment dapH-dapL-patA-lox71-kanR-lox66

[0117] (1) Using the chromosomal genomic DNA of Bacillus subtilis subsp.subti...

Embodiment 2

[0154] Example 2, the application of Escherichia coli chassis bacteria without the tricarboxylic acid cycle in the synthesis of the target product with α-ketoglutarate as the precursor (taking glutamic acid as an example)

[0155] α-Ketoglutarate is the precursor of many important amino acids such as glutamine and glutamic acid. Under the catalysis of glutamate dehydrogenase, α-ketoglutarate undergoes reductive amination reaction to generate glutamate. The Escherichia coli chassis without the tricarboxylic acid cycle can be widely used in the synthesis of the target product with α-ketoglutarate as the precursor. Taking the synthesis of glutamic acid as an example, the application of Escherichia coli without the tricarboxylic acid cycle in the synthesis of the target product with α-ketoglutarate as the precursor is illustrated.

[0156] 1. Construction of engineering bacteria producing glutamate

[0157] 1. Using the genomic DNA of the BW25113 strain as a template, PCR amplif...

Embodiment 3

[0174] Embodiment 3, the application of Escherichia coli chassis bacteria without tricarboxylic acid cycle in the synthesis reaction catalyzed by α-ketoglutarate-dependent dioxygenase (to synthesize deacetoxycephalosporin (G-7-ADCA ) for example)

[0175] α-ketoglutarate is the co-substrate of a series of α-ketoglutarate-dependent dioxygenases such as hydroxylase and expandase. Synthetic reactions catalyzed by ketoglutarate-dependent dioxygenases. Taking the synthesis of G-7-ADCA as an example, the application of Escherichia coli without tricarboxylic acid cycle in the synthesis reaction catalyzed by α-ketoglutarate-dependent dioxygenase is illustrated below.

[0176] 1. Construction of engineering strains

[0177] 1. Using the plasmid pDB1s-DAOCS (recorded in the Chinese Invention Patent Literature, Publication No. CN104805047A) as a template, PCR amplification was performed using primers P31 and P32 to obtain the gene encoding deacetoxycephalosporin synthase scDAOCS. The ...

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Abstract

The invention discloses tricarboxylic acid cycle-free Escherichia coli chassis bacteria as well as a construction method and application thereof. The preparation method of the Escherichia coli chassis bacteria comprises the following steps: increasing the expression quantity and / or activity of tetrahydropyridine dicarboxylic acid: N-acetyltransferase, N-acetyl diaminopimelic acid deacetylase, N-acetyl diaminopimelic acid aminotransferase, O-acetyl homoserine thiolase and homoserine: O-acetyltransferasein host bacteria (Escherichia coli or mutant Escherichia coli), reducing the expression quantity and / or activity of tetrahydropicolinic acid: N-succinyltransferase and homoserine: O-succinyltransferase in the host bacteria, and obtaining the tricarboxylic acid cycle-free Escherichia coli chassis bacteria. Experiments prove that the Escherichia coli chassis bacteria can reduce the carbon loss rate and improve the capability of synthesizing a target product by taking central metabolic intermediates (such as acetyl coenzyme A, pyruvic acid and alpha-ketoglutaric acid) as precursors. The tricarboxylic acid cycle-free Escherichia coli chassis bacteria and the preparation method have an important application value.

Description

technical field [0001] The invention belongs to the field of biotechnology, and in particular relates to an Escherichia coli chassis bacterium without tricarboxylic acid cycle and its construction method and application. Background technique [0002] The tricarboxylic acid cycle (TCA cycle) is an important part of the central carbon metabolism of Escherichia coli. The biosynthesis of numerous bio-based chemicals is dependent on the tricarboxylic acid cycle intermediate metabolite α-ketoglutarate. At the same time knockout the α-ketoglutarate dehydrogenase gene (sucA) and the isocitrate lyase gene (aceA) in the tricarboxylic acid cycle of Escherichia coli, forcing more α-ketoglutarate to flow to the target product synthesis, is The best way to facilitate the synthesis of target products. [0003] When Escherichia coli grows aerobically with glucose as the only carbon source in the inorganic salt basal medium, the tricarboxylic acid cycle undertakes the function of completel...

Claims

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Application Information

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IPC IPC(8): C12N15/70C12N15/90C12N15/55C12N15/54C12N15/60C12N1/21C12P13/14C12P35/06C12P7/40C12R1/19
CPCC12N15/70C12N15/902C12N15/52C12N9/80C12N9/1096C12N9/1029C12N9/88C12P13/14C12P35/06C12P7/40C12Y305/01047C12Y206/01083C12Y203/0103C12Y203/01117C12Y203/01046C12Y402/99
Inventor 林白雪周航张译文钟晓彤刘洁铮陶勇
Owner INST OF MICROBIOLOGY - CHINESE ACAD OF SCI
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