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Nucleic acid detection kit for human papillomavirus and method and application thereof

A technology for human papillomavirus and detection kits, which is applied in the directions of microorganism-based methods, biochemical equipment and methods, and microbial determination/inspection, etc. Inability to distinguish accurately, etc.

Active Publication Date: 2019-03-12
SUZHOU SYM BIO LIFESCI CO LTD
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0012] 3) Second-generation hybrid capture, HCII: the first FDA-approved method for clinical testing applications, which can distinguish between high and low risks, and can be relatively quantified. The disadvantages are: no internal standard, long detection time (DNA decomposition 45min, DNA-RNA hybridization 60 minutes, antibody capture 60 minutes, chemiluminescence 30 minutes, computer interpretation 15 minutes), low sensitivity, high cost, and cross-reaction with HPV subtypes outside the detection range, resulting in false positive results
Disadvantages: low sensitivity, easy to pollute when opening the cover, expensive
Advantages: Can be classified into specific types; Disadvantages: Manual operation is cumbersome, easy to pollute when opening the cover, and expensive
However, the fluorescent PCR method is limited by the detection channel. Generally, only 16, 18, 6, and 11 can be typed, and other types cannot be specifically typed.
At the same time, the target sequence of most PCR typing products is the L region, which cannot accurately distinguish some types
[0016] In summary, cervical cytology detection and pathological examination are greatly affected by subjective factors, and the sensitivity is low, so there is a certain rate of missed detection in clinical application; nucleic acid hybridization method, hybrid capture method, molecular diversion hybridization method, Compared with the former, the liquid chip method has improved sensitivity and a larger coverage for HPV type detection, but it is prone to contamination during operation, resulting in false positive results; real-time fluorescent PCR method has higher sensitivity and specificity. It can greatly reduce the false positive rate and missed detection rate, and the detection process can be fully automated, reducing human input. However, due to the restriction of the number of fluorescent channels and the difficulty of multiplex PCR technology, there are certain limitations in determining the HPV type. limit
[0017] The above-mentioned detection methods all have their own defects, which bring certain difficulties to the diagnosis and treatment of clinical HPV.

Method used

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  • Nucleic acid detection kit for human papillomavirus and method and application thereof
  • Nucleic acid detection kit for human papillomavirus and method and application thereof
  • Nucleic acid detection kit for human papillomavirus and method and application thereof

Examples

Experimental program
Comparison scheme
Effect test

no. 1 approach

[0093] A human papillomavirus nucleic acid detection kit is provided in this embodiment, which can qualitatively detect the infection of high-risk types and low-risk types of human papillomaviruses (HPV), such as 16, 18, 52 . to test. The kit can be used for auxiliary diagnosis of clinical HPV infection and early screening of cervical cancer.

[0094] 1. Kit A: Storage temperature: 2-8°C

[0095] Table 3 Nucleic acid extraction reagents

[0096]

[0097] Wherein, the lysis solution is a solution containing guanidine isothiocyanate and TritonX-100, or the lysis solution is a solution containing guanidine isothiocyanate and Tween-20; wherein, the concentration of guanidine isothiocyanate in the lysis solution is 4M, the volume concentration of TritonX-100 or Tween-20 is 1.5%;

[0098] The preparation method of the binding solution is as follows: dissolve 200g of sodium perchlorate and 30g of sodium acetate in a small amount of purified water, then add 500ml of absolute et...

Embodiment 1

[0182] Example 1 Using the above kit to detect HPV infection in clinical samples

[0183] 100 positive clinical samples were tested with the above kit, and all samples were verified by the gold standard sequencing method. The test results and analysis results are shown in the table below.

[0184] Use the above kit to detect HPV infection in clinical samples.

[0185] Table 11

[0186]

[0187]

[0188]

[0189]

[0190]

[0191]

[0192]

[0193]

[0194] The comparison between the test results of the above kits and the sequencing results is shown in the table below:

[0195] Table 12

[0196]

[0197] Note: The clinical sample type not detected by the above kit is the HPV type outside the detection range of the kit.

[0198] The above kits were used to detect 100 positive clinical samples. For HPV types within the detection range (HPV16, 18, 52, 58, 31, 33, 45, 6, 11, 35, 39, 51, 53, 56, 59, 66, 68, 73, 82, 26, 40, 42, 43, 44) have good detection...

Embodiment 2

[0199] Example 2 The above kit was used to detect HPV infection in clinical mixed infection samples.

[0200] The collected 50 cases of mixed infection samples were tested separately, and the test results are as follows:

[0201] Table 13

[0202]

[0203]

[0204]

[0205] Among the 50 mixed infection samples, the detection results of the above kits were the same as those given by the sampling unit, and the HPV genotypes within the detection range could be accurately detected, and individual rare samples were not included in the collected samples.

[0206] In summary, the performance indicators of the kit in the present embodiment are as follows:

[0207] 1) Sensitivity: The minimum detection limit of HPV that can be stably detected by this kit is: 1.0×10 3 copies / ml. Figure 1-5 The detection limit of detection (LOD) of the above kits for each type of HPV is given.

[0208] 2) Genotype detection: this product can be used for 26, 31, 33, 35, 39, 52, 53, 56, 58, 5...

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Abstract

The invention discloses a nucleic acid detection kit for human papilloma virus, a use method and an application thereof. The kit includes a nucleic acid amplification reagent comprising a primer pair and a probe corresponding to the primer pair. The use method of the kit includes the following steps: 1) extracting nucleic acids from a sample; 2) preparing the reagent; 3) performing PCR amplification; and 4) performing fluorescent detection to a PCR amplification reaction product at 65-72 DEG C, and determining infection type of the HPV according to the changes on the Ct value of a target amplification curve and the Ct value of an internal standard amplification curve. The kit can be used for detecting low-risk and high-risk human papilloma virus and for typing the human papilloma virus. The kit can be used for calculating relative viral load of the HPV, can avoid pollution, can increase treatment throughput of samples, and can avoid missing detection.

Description

technical field [0001] The invention relates to a nucleic acid detection kit and its use method and application, in particular to a human papillomavirus nucleic acid detection kit and its use method and application. Background technique [0002] Human papillomavirus (HPV) is a kind of papillomavacuolating virus A belonging to Papovaviridae. It is a spherical DNA virus with high specificity. It can infect the squamous epithelium of skin and mucous membrane and cause proliferation. At present, more than 130 kinds have been isolated, and different types cause different clinical manifestations. According to the different tissue parts invaded, they can be divided into: [0003] Skin low-risk types (HPV1, 2, 3, 4, 7, 10, 12, 15, etc.), which are related to common warts, flat warts, plantar warts, etc.; [0004] High-risk skin types (HPV5, 8, 14, 17, 20, 36, 38); [0005] Mucosa low-risk types (HPV6, 11, 13, 32, 34, 40, 42, 43, 44, 53, 54, etc.); [0006] Mucosa high-risk types ...

Claims

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Application Information

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Patent Type & Authority Patents(China)
IPC IPC(8): C12Q1/70C12Q1/686C12R1/93
Inventor 邓明文张健孟影顾颖慧
Owner SUZHOU SYM BIO LIFESCI CO LTD
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