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PCR identifying method for nitrite bacteria

A technology of nitrosating bacteria and identification methods, which is applied in the direction of biochemical equipment and methods, and microbial determination/inspection, etc. It can solve the problems of low specificity of PCR amplification results, prolonging the identification cycle of bacteria species, and failing to achieve rapid detection, etc. problems, to achieve the results of high reliability, shortened overall time, and short detection time

Inactive Publication Date: 2017-05-31
CHAMBROAD CHEM IND RES INST CO LTD
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

This method uses general primers for the bacterial 16S rDNA region as amplification primers. After PCR amplification, the PCR products must be sequenced and compared before the bacteria can only be identified as genus. In this way, the results of PCR amplification using general primers are specific. It is not high, and it also prolongs the identification cycle of bacteria species, failing to achieve the purpose of rapid detection

Method used

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  • PCR identifying method for nitrite bacteria
  • PCR identifying method for nitrite bacteria
  • PCR identifying method for nitrite bacteria

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0024] Embodiment 1 A kind of PCR identification method of nitrosative bacteria

[0025] Sample source: Petrochemical atmospheric and vacuum plant sewage, after phenol and desulfurization treatment, enters the biochemical treatment pool, and the waste water from this treatment pool is selected as sample 1.

[0026] Sample testing:

[0027] (1) Design and synthesis of primers: Using the exclusive characteristic gene ammonia monooxygenase gene (amoA) of nitrosative bacteria as a template, according to the principles of primer design, a pair of specific primers were designed and synthesized using primer 5.0 software. The specific sequences of the primers are as follows :

[0028] Upstream primer (F): 5'-GGGGTTTCTACTCCTGGT-3', the nucleotide sequence of which is shown in Seq ID No:1;

[0029] Downstream primer (R): 5'-CCCCTCGGGAAAGCCTTCTTC-3', the nucleotide sequence of which is shown in Seq ID No:2;

[0030] (2) Extraction of bacterial strain genomic DNA: Genomic DNA in the wa...

Embodiment 2

[0036] Embodiment 2 A kind of PCR identification method of nitrosative bacteria

[0037] Source of sample: Wastewater from thiourea chemical plant, after treatment to remove residual thiourea, it enters the biochemical treatment pool, and the wastewater from this treatment pool is selected as sample 2.

[0038] Sample testing:

[0039] (1) Design and synthesis of primers: Using the exclusive characteristic gene ammonia monooxygenase gene (amoA) of nitrosative bacteria as a template, according to the principles of primer design, a pair of specific primers were designed and synthesized using primer 5.0 software. The specific sequences of the primers are as follows :

[0040] Upstream primer (F): 5'-GGGGTTTCTACTCCTGGT-3', the nucleotide sequence of which is shown in Seq ID No:1;

[0041] Downstream primer (R): 5'-CCCCTCGGGAAAGCCTTCTTC-3', the nucleotide sequence of which is shown in Seq ID No:2;

[0042](2) Extraction of bacterial strain genomic DNA: Genomic DNA in sample 2 wa...

Embodiment 3

[0048] Embodiment 3 A kind of PCR identification method of nitrosative bacteria

[0049] Sample source: Wastewater from the agrochemical ether ester plant, after removing sulfides and macromolecular organic hydrocarbons, enters the biochemical treatment pool, and the wastewater from this treatment pool is selected as sample 3.

[0050] Sample testing:

[0051] (1) Design and synthesis of primers: Using the exclusive characteristic gene ammonia monooxygenase gene (amoA) of nitrosative bacteria as a template, according to the principles of primer design, a pair of specific primers were designed and synthesized using primer 5.0 software. The specific sequences of the primers are as follows :

[0052] Upstream primer (F): 5'-GGGGTTTCTACTCCTGGT-3', the nucleotide sequence of which is shown in Seq ID No:1;

[0053] Downstream primer (R): 5'-CCCCTCGGGAAAGCCTTCTTC-3', the nucleotide sequence of which is shown in Seq ID No:2;

[0054] (2) Extraction of bacterial strain genomic DNA: ...

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Abstract

The invention belongs to the technical field of bioengineering and provides a PCR identifying method for nitrite bacteria. A special feature gene-ammonia monooxygenase gene of nitrite bacteria is used as a template to design and synthesize a pair of specific primers; a nitrite bacteria genome DNA is used as a template for PCR amplification; the PCR amplification condition is optimized, and then the PCR amplification product is subjected to agarose level electrophoresis; and whether the bacterial strain belongs to nitrite bacteria or the nitrite bacteria is contained in the mixed flora can be judged according to the existence and size of the strip in a track lane. According to the method, the specific primer designed by taking the ammonia monooxygenase gene as a template is the PCR amplification primer; an experimental result is high in specificity; the experimental operation is simple; the result reliability is high; the identifying period of the nitrite bacteria is shortened in the manner of optimizing the PCR amplification condition; the amplification time is above 26% shorter than the conventional PCR amplification time; and a quick and effective identifying method is supplied for identifying the nitrite bacteria population.

Description

technical field [0001] The invention belongs to the technical field of bioengineering and provides a PCR identification method for nitrosating bacteria. Background technique [0002] In recent years, my country's environmental pollution has become increasingly serious and has become a major problem facing mankind. In particular, ammonia nitrogen pollution in industrial and domestic sewage can cause a series of problems such as eutrophication of water bodies and disturbance of water body ecosystems. Biological nitrification denitrification is currently a hot spot in the field of water treatment. It is completed by nitrification and denitrification. Nitrification is divided into two stages. First, ammonia nitrogen is oxidized to nitrite nitrogen by nitrifying bacteria, and then nitrifying bacteria Oxidizes nitrite nitrogen to nitrate nitrogen. However, the compliance rate of biological nitrification denitrification pools that have been in operation is not high. The key to so...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/68C12Q1/04
CPCC12Q1/686C12Q1/689C12Q2531/113
Inventor 车树刚马韵升刘圣鹏马娜娜张心青冉新新郭南南李琦任晓燕张萧萧
Owner CHAMBROAD CHEM IND RES INST CO LTD
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