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Primer group and kit for simultaneously detecting multiple pathogenic fungi

A primer set and kit technology, applied in the field of microbial detection, can solve the problems of low detection throughput, long detection time, complicated operation, etc., and achieve the effects of high detection sensitivity, fast detection speed, and high detection efficiency.

Active Publication Date: 2021-03-19
THE THIRD AFFILIATED HOSPITAL OF SUN YAT SEN UNIV +1
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

Ordinary PCR and fluorescent quantitative PCR technology can quickly detect trace fungi with high specificity, but only one or several pathogenic fungi can be detected in one experiment, and the detection throughput is low; although gene chip technology has high detection throughput, However, the operation is cumbersome and the detection takes a long time

Method used

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  • Primer group and kit for simultaneously detecting multiple pathogenic fungi
  • Primer group and kit for simultaneously detecting multiple pathogenic fungi
  • Primer group and kit for simultaneously detecting multiple pathogenic fungi

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0042] Example 1. Molecular marker screening and primer sequence construction

[0043] Collect Candida albicans, Candida tropicalis, Candida glabrata, Candida parapsilosis, Candida krusei, Aspergillus fumigatus, Aspergillus terreus, Trichophyton mentagrophytes, Trichophyton rubrum, Epidermophyton flocculus, Sporothrix, ITS sequences, β-tubulin gene sequences, translation elongation factor (translation elongation factor, TEF), actin (actin) genes, mitochondrial cytochrome B genes, etc. Species molecular marker sequence, and compare the base difference information of the same molecular marker sequence of fungi of different species. Finally, 14 conserved sequence regions with large inter-species variability but intra-species specificity were screened out as targets for species identification. The ITS sequences of Candida, Trichophyton, and Epidermophyton flocculus, Sporothrix, Microsporum canis, Epiphyllum, and Malassezia, and the β-tubulin sequences of Aspergillus Large and sp...

Embodiment 2

[0045] Example 2. Screening of fluorescently labeled primers and establishment of a detection system

[0046] (1) Extract fungal DNA by phenol-chloroform method

[0047] Use an inoculation loop to scrape the fungi from the fungal culture medium, be careful not to scrape the culture medium, grind with liquid nitrogen 4-6 times, and then use the phenol-chloroform method to extract the fungal DNA. Add 500 μL of STE buffer (10 mM, pH 8.0), 50 μL of 10% SDS, 50 μL of proteinase K in sequence, and bathe in water at 56° C. for 6 h. Add 500 μL of phenol-chloroform / isoamyl alcohol (25:24:1), shake and mix, and centrifuge at 12000 rpm for 10 min. Transfer the supernatant to a new centrifuge tube, add 500 μL of chloroform / isoamyl alcohol (24:1), shake and mix, and centrifuge at 12000 rpm for 10 min. Transfer the supernatant to a new centrifuge tube, add 2 times the volume of absolute ethanol, and centrifuge at 12,000 rpm for 10 min. Pour off the supernatant, add 50 μL TE buffer to dis...

Embodiment 3

[0056] Embodiment 3. Sensitivity test

[0057] Dilute the DNA concentration of 14 kinds of pathogenic fungi to 0.1ng / μL, 0.01ng / μL, 0.005ng / μL, 0.002ng / μL, 0.001ng / μL, 0.0005ng / μL, 0.0002ng / μL as provided in Example 2 The multiple detection kit of the pathogenic fungus is detected, and the results are shown in Table 2. The detection sensitivity of the multiple fluorescent-labeled PCR detection system to 14 kinds of fungi is 10 2 copies.

[0058] Table 2 Sensitivity results of multiple detection kits

[0059]

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Abstract

The invention discloses a primer group and kit for simultaneously detecting various pathogenic fungi. The primer group comprises 14 pairs of primers, and the primers can perform specific multiplex amplification on DNA sequences of 14 target fungi, wherein the target fungi comprise candida albicans, candida tropicalis, candida glabrata, candida parapsilosis, candida krusei, aspergillus fumigatus, aspergillus terreus, trichophyton mentagrophytes, trichophyton rubrum, epidermophytom floccosum, sporothrix schenckii, microsporum caninum, fonsecaea pedrosoi and malassezia fufur. The kit adopts a multiple fluorescence labeling PCR amplification technology for multiplex amplification, multiple common pathogenic fungi can be identified at the same time through a one-time reaction, the detection efficiency is high, the speed is high, and the cost is low; in addition, interspecific and intraspecific comparison can be performed on sequences in a fungus ITS or beta-tubulin database, an intraspecific conserved region is selected to design an amplification primer, and very strong species specificity is achieved. The whole detection process can be completed within 2-3 hours, the detection speed ishigh, and the requirement for rapid detection of clinical samples can be met.

Description

technical field [0001] The disclosure belongs to the technical field of microbial detection, and in particular relates to a primer set for simultaneous detection of multiple pathogenic fungi, a kit containing the primer set, and applications thereof. Background technique [0002] Mycosis is a general term for a class of diseases caused by pathogenic fungi. Common pathogenic fungi include Candida, Aspergillus, Trichophyton, Epidermophyton flocculus, Sporothrix, Microsporum canis, Bacillus, Malassezia, etc. According to the different parts of the infected body, it can be divided into superficial mycosis and deep mycosis. The pathogenic fungi of superficial mycosis are mostly ringworm, Microsporum canis and Malassezia, etc., which generally invade human skin, nails and hair. Although there are few fatal cases, the incidence rate is high and easy to develop. Recurrence; the pathogenic fungi of deep mycoses are mostly Candida, Aspergillus, Sporothrix, and Germinal bacteria, etc...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/6895C12Q1/686C12Q1/04C12N15/11
CPCC12Q1/6895C12Q1/686C12Q2600/16C12Q2537/143C12Q2563/107C12Q2565/125
Inventor 杜蔚安黄怀球吴榕郑阳阳黄志杰
Owner THE THIRD AFFILIATED HOSPITAL OF SUN YAT SEN UNIV
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