The invention relates to a medical capsule enteroscopy system capable of entering small intestine for examination. The invention especially relates to a color Doppler ultrasound capsule enteroscopy system, which comprises a capsule enteroscopy, a controller terminal and a workstation, wherein the capsule enteroscopy consists of a shell, an annular air bag is arranged on the outer surface of the shell, a color Doppler ultrasound module, a data processing chip, an assistant model, a power supply module, a data processing module and a CCD (Charge Coupled Device) module are arranged in the shell in sequence, and the color Doppler ultrasound module, the data processing chip, the assistant module, the power supply module, the data processing module and the CCD module are connected in turn. The medical capsule enteroscopy system combines the color Doppler ultrasonic technology and a CCD at the same time, can provide a color Doppler ultrasonic image and a clear intestinal tract wall image, enrich the diagnosis means for intestines problems, and effectively improve the accuracy of diagnosis.