The invention provides a method for improving an intestinal colony structure and an application in the preparation of medicines, nourishment, health products, foods and beverages used for adjusting the intestinal colony. A high-flux sequence test technology and a
multivariate statistical method are employed to find the intestinal colony groups which are closely related with host
metabolism. According to the invention,
berberine is taken as a sample to establish a novel method for improving the intestinal colony structure, the method comprises the steps of selectively increasing a part of
bacteria, such as short chain aliphatic
acid producing bacteria and the like, and simultaneously inhibiting a part of strain, such as
bacteria capable of producing endotoxin and the like, thereby the disorders of
metabolism or an immunization
system due to enhancement of
system inflammatory diseases induced by improper diet,
obesity,
insulin resistance and the like can be prevented or treated. The invention also provides a method for screening medicines, compounds and foods having the analogous effects, and a composition for improving the intestinal colony structure. The application of the method can be used for exploiting the medicines, nourishment, health products, foods, beverages and the like which take the intestinal colony as a target.