Provided is an application of natural faeces 
flora transplanting in intestinal 
disease treatment. Faeces of healthy people screened through multiple conditions is collected, intestinal canal mixed 
probiotic flora is collected through the steps of homogenating, suspending, diluting, filtering, centrifuging and the like and transplanted in the ways of a gastroscope, an 
enteroscope, a 
nose-
jejunum tube, a fistulization opening, clysis and the like, 
flora balance in the intestinal canal is restored, and the effect of treating intestinal diseases is achieved. A method for treating 
bacteria with 
bacteria is adopted, the stability of the intestinal flora of a 
human body is maintained, a microecological treating method free of 
drug resistance and toxic and side effects is achieved, treatment is carried out in the mode of faeces bacterium capsules or bacterium liquid, and a good 
treatment effect is achieved on 
diarrhea, 
clostridium difficile infection, Crohn's diseases and the like.