The invention relates to a thrombus treatment system which comprises a first catheter, a second catheter, a plugging device and a stirring device, the first catheter is provided with a first channel,the second catheter is provided with a second channel, the plugging device comprises a third catheter and a plugging device which is arranged at the far end of the third catheter and has an open stateand a closed state, the stirring device comprises a first sheathing canal, a second sheathing canal arranged outside the first sheathing canal in a sliding and sleeving mode and a stirring assembly arranged at the far end of the first sheathing canal. A large amount of thrombus in the inferior vena cava can be removed under the condition that relative safety is guaranteed, the venous valve and the venous vessel wall are protected, the blood loss amount is controllable, the operation steps are simple, operation is more convenient, the operation time can be shortened, and the hospitalization cost of a patient is reduced.