Nasba primers, kits and methods for detecting apple rust viroids
The technology of a rust-like virus and a kit is applied in the field of plant pathogen detection, which can solve the problems of low viral RNA content, low repeatability, poor stability, etc., and achieve the effects of high sensitivity, low repeatability and fewer cycles.
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Embodiment 1
[0050] 1 material
[0051] 1.1 Viruses
[0052] Apple rust virus was provided by the Chinese Academy of Inspection and Quarantine, hop stunt vroid (HSVd), pear blister canker viroid (PBCVd), peach latent mosaic virus (Peach latent mosaic viroid, PLMVd), apple stem pitting virus (Apple stem pitting virus, ASPV) are preserved by our laboratory.
[0053] 1.2 Reagents
[0054] Reverse transcription polymerase AMV, RNaseH, RNase inhibitor, T7 RNA polymerase, dNTP, ssRNAmarker, rNTP were all purchased from NEW ENGLAND BIOLAB; PCR amplification reagents, DNA markers, etc. were purchased from Beijing Tiangen Company;
[0055] 1.3 Primers
[0056] According to the full-length sequence of the apple rust viroid gene (accession number EU825613.1) in the NCBI nucleic acid sequence database, the highly conserved region of the apple rust viroid was compared and analyzed under the premise of ensuring the amalgamation and versatility of the amplification, and the design NASBA reaction prim...
Embodiment 2
[0068] Embodiment 2 specificity experiment
[0069] 1. Extract the RNA of apple rust virus-like virus, hop dwarf virus-like virus, pear blister ulcer virus-like virus, peach latent mosaic virus and apple stempox virus, and use NASBA method to detect.
[0070] 2. Extraction of viral RNA
[0071] Take 0.1 g sample, grind it into powder with liquid nitrogen, transfer the ground material into a 1.5 mL centrifuge tube quickly, add 1 mL Trizol Reagent, mix by inversion, 2°C~8°C, 12000 g, centrifuge for 10 min. Take the supernatant, keep it at 15°C~30°C for 5min; add 0.2 mL of chloroform, shake vigorously by hand (do not vortex) for about 15s. 15°C~30°C, stand for 2min~3min; 2°C~8°C, 12000 g, centrifuge for 15min. Carefully pipette approximately 600 µL of the upper aqueous phase without disturbing the middle and lower phases. Add 500 μL of isopropanol to mix the supernatant, and place it at 15°C~30°C for 10min. 2°C~8°C, 12000g, centrifuge for 10min. Remove the supernatant, add 1...
Embodiment 3
[0080] Embodiment 3 Sensitivity experiment
[0081] 1. Use DEPC water to make a 10-fold gradient dilution of the apple rust virus-like RNA template solution downwards, in order of 1×10 -1 , 1×10 -2 , 1×10 -3 , 1×10 -4 , 1×10 -5 , 1×10 -6 ng / μL, each 2 μL was used as a template for NASBA amplification reaction. .
[0082] 2. Extraction of viral RNA
[0083]Take 0.1 g sample, grind it into powder with liquid nitrogen, transfer the ground material into a 1.5 mL centrifuge tube quickly, add 1 mL Trizol Reagent, mix by inversion, 2°C~8°C, 12000 g, centrifuge for 10 min. Take the supernatant, keep it at 15°C~30°C for 5min; add 0.2 mL of chloroform, shake vigorously by hand (do not vortex) for about 15s. 15°C~30°C, stand for 2min~3min; 2°C~8°C, 12000 g, centrifuge for 15min. Carefully pipette approximately 600 µL of the upper aqueous phase without disturbing the middle and lower phases. Add 500 μL of isopropanol to mix the supernatant, and place it at 15°C~30°C for 10min. ...
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