Multiplex quantitative PCR kit for rapid joint detection of four difficult-to-culture and identification bacteria

A kit and bacteria technology are applied in the field of multiple quantitative PCR kits for rapid joint inspection of four types of bacteria that are difficult to culture and identify, which can solve the problems that the sensitivity and specificity need to be improved, the separation and culture are difficult, and the technical requirements are high, and the clinical efficacy is great. , improve detection sensitivity, reduce the effect of overuse

Active Publication Date: 2018-06-29
HANGZHOU FIRST PEOPLES HOSPITAL
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

Sputum bacterial culture is still a routine test item. Positive bacterial culture is the gold standard for diagnosis and has certain clinical value. However, it grows slowly, takes a long time to culture, and has high technical requirements. It is difficult to isolate and culture from clinical samples and difficult to identify. Easy to confuse and cause misdiagnosis, especially in mixed infections, some potential pathogenic bacteria may be overlooked, thus limiting its clinical application
In addition, although the serological method is mature and commercial kits are available, the sensitivity and specificity need to be improved. At the same time, it is necessary to detect double serum in the acute phase and the convalescent phase to be diagnostically meaningful and it is easy to miss the diagnosis.

Method used

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  • Multiplex quantitative PCR kit for rapid joint detection of four difficult-to-culture and identification bacteria
  • Multiplex quantitative PCR kit for rapid joint detection of four difficult-to-culture and identification bacteria
  • Multiplex quantitative PCR kit for rapid joint detection of four difficult-to-culture and identification bacteria

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Effect test

Embodiment 1

[0068] A multiplex quantitative PCR kit for rapid joint detection of four difficult-to-cultivate and identify bacteria, consisting of DNA extract, quadruple fluorescent PCR reaction solution, 1 negative quality control, 1 strong positive quality control, and 1 weak positive quality control Products, 5 concentrations of positive quantitative standards. Among them, the quadruple fluorescent PCR reaction solution is four sets of primers, probes and qPCR reaction buffer (containing Mg 2+ ), four kinds of dNTP, Hot Start Taq DNA polymerase and other components. The negative quality control product was sterile water for injection. Strong and weak positive quality control products are positive plasmid samples mixed with equal amounts of Haemophilus influenzae (HI), Streptococcus pneumoniae (SP), Moraxella catarrhalis (MC) and Legionella pneumophila (LP). Quality Control Concentration 10 7 Copies / μl, weak positive quality control concentration 10 3 Copies / μl. The 5 positive quant...

Embodiment 2

[0096] The detection method of the multiplex quantitative PCR kit of four kinds of hard-to-culture identification bacteria comprises the following steps:

[0097] (1) Primer design: The conserved genes specific to Haemophilus influenzae (HI), Streptococcus pneumoniae (SP), Moraxella catarrhalis (MC) and Legionella pneumophila (LP) were retrieved from GenBank, and the sequence Compare and determine their respective highly conserved sequence regions, and design specific primers as the specific nucleic acid sequences of the target genes to be detected;

[0098] (2) Fluorescent probe design: design fluorescent probes according to the specific nucleic acid sequences of the target genes of the four bacteria in step (1);

[0099] (3) Construction of standard products: According to the specific primers determined in step (1), use gene cloning technology to construct four standard plasmid molecules containing highly conserved sequence regions of HI, SP, MC, and LP;

[0100] (4) Optimi...

Embodiment 3

[0113] 1. Construction of four bacterial (HI, SP, MC, LP) target gene plasmid cloning vectors

[0114] Using the T-A vector cloning scheme, the PCR products of the four target genes were electrophoresed to confirm the molecular weight of the amplified fragments, and the amplified fragments were recovered and purified by 2% agarose gel, cloned into the pUC57 plasmid, and then the ligated products were transformed into competent large intestine In Escherichia coli, screen positive colonies on LB / Amp / X-Gal / IPTG plates, recover, extract, and purify recombinant plasmids, quantify the verified and correct target plasmids with a UV spectrophotometer, and use 1× TE (pH8.0) buffer diluted to 10 10 copies / μl as a stock solution, and stored at –20°C for future use.

[0115] 2. DNA template extraction

[0116] 2.1 Sputum: Add 4 times the volume of normal saline to the sputum, pipette it repeatedly with a 1ml pipette tip, and place it in a refrigerator at 4°C overnight to fully liquefy t...

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Abstract

The invention provides a multiple quantitative PCR (polymerase chain reaction) kit for quick combined detection of four bacteria difficult to cultivate and identify. The multiple quantitative PCR kit comprises four PCR reaction systems, wherein the four PCR reaction systems comprise AllGlo fluorescence probes and forward and reverse primers aimed at the following four pathogens which cause child bacterial pneumonia and are clinically difficult to cultivate and identify: haemophilus influenza, streptococcus pneumonia, moraxella catarrhalis and legionella pneumophila. According to the multiple quantitative PCR kit, the design is reasonable, the infection of the four pathogens, clinically difficult to cultivate and identify, of child bacterial pneumonia can be easily, conveniently, quickly and parallelly detected in a reaction tube at the same time, the situation that four bacteria are detected at the same time through single-tube PCR is achieved, quantitative detection is achieved, the kit is easy and quick to operate, high in sensitivity, good in specificity and repeatability, accurate and reliable in result, early specific diagnosis, prevention and treatment can be provided for patients suffering from infantile pneumonia according to the bacterial infection titer, and the kit has great clinical practicability for interdicting an infection source, reducing infection or mixed infection of the four bacteria and monitoring the clinical curative effect.

Description

technical field [0001] The invention belongs to biotechnology, and relates to a multiplex quantitative PCR kit for rapid joint detection of four difficult-to-culture and identification bacteria, in particular to the detection of Haemophilus influenzae (Haemophilus Influenzae, HI), Streptococcus pneumoniae (Streptococcus Pneumoniae, SP), catarrhal Quadruple quantitative PCR kits for Moraxella (Moraxella Catarrhalis, MC) and Legionella Pneumophila (Legionella Pneumophila, LP). Specifically, the present invention relates to the application of quadruple quantitative PCR technology in a PCR reaction tube to rapidly and parallel A kit for simultaneously detecting four types of bacteria (HI, SP, MC, LP). Background technique [0002] According to the World Health Organization (WHO), pneumonia is the "number one killer" of children worldwide and the second cause of death for children under 5 years of age. In my country, childhood pneumonia is also an important common disease in chi...

Claims

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Application Information

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Patent Type & Authority Patents(China)
IPC IPC(8): C12Q1/689C12Q1/6851C12Q1/14C12Q1/04C12R1/21C12R1/46C12R1/01
CPCC12Q1/6851C12Q1/689C12Q2600/16C12Q2531/113C12Q2537/143C12Q2545/113
Inventor 余道军陈懿何慧
Owner HANGZHOU FIRST PEOPLES HOSPITAL
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