Multiplex quantitative PCR kit for rapid joint detection of four difficult-to-culture and identification bacteria
A kit and bacteria technology are applied in the field of multiple quantitative PCR kits for rapid joint inspection of four types of bacteria that are difficult to culture and identify, which can solve the problems that the sensitivity and specificity need to be improved, the separation and culture are difficult, and the technical requirements are high, and the clinical efficacy is great. , improve detection sensitivity, reduce the effect of overuse
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Embodiment 1
[0068] A multiplex quantitative PCR kit for rapid joint detection of four difficult-to-cultivate and identify bacteria, consisting of DNA extract, quadruple fluorescent PCR reaction solution, 1 negative quality control, 1 strong positive quality control, and 1 weak positive quality control Products, 5 concentrations of positive quantitative standards. Among them, the quadruple fluorescent PCR reaction solution is four sets of primers, probes and qPCR reaction buffer (containing Mg 2+ ), four kinds of dNTP, Hot Start Taq DNA polymerase and other components. The negative quality control product was sterile water for injection. Strong and weak positive quality control products are positive plasmid samples mixed with equal amounts of Haemophilus influenzae (HI), Streptococcus pneumoniae (SP), Moraxella catarrhalis (MC) and Legionella pneumophila (LP). Quality Control Concentration 10 7 Copies / μl, weak positive quality control concentration 10 3 Copies / μl. The 5 positive quant...
Embodiment 2
[0096] The detection method of the multiplex quantitative PCR kit of four kinds of hard-to-culture identification bacteria comprises the following steps:
[0097] (1) Primer design: The conserved genes specific to Haemophilus influenzae (HI), Streptococcus pneumoniae (SP), Moraxella catarrhalis (MC) and Legionella pneumophila (LP) were retrieved from GenBank, and the sequence Compare and determine their respective highly conserved sequence regions, and design specific primers as the specific nucleic acid sequences of the target genes to be detected;
[0098] (2) Fluorescent probe design: design fluorescent probes according to the specific nucleic acid sequences of the target genes of the four bacteria in step (1);
[0099] (3) Construction of standard products: According to the specific primers determined in step (1), use gene cloning technology to construct four standard plasmid molecules containing highly conserved sequence regions of HI, SP, MC, and LP;
[0100] (4) Optimi...
Embodiment 3
[0113] 1. Construction of four bacterial (HI, SP, MC, LP) target gene plasmid cloning vectors
[0114] Using the T-A vector cloning scheme, the PCR products of the four target genes were electrophoresed to confirm the molecular weight of the amplified fragments, and the amplified fragments were recovered and purified by 2% agarose gel, cloned into the pUC57 plasmid, and then the ligated products were transformed into competent large intestine In Escherichia coli, screen positive colonies on LB / Amp / X-Gal / IPTG plates, recover, extract, and purify recombinant plasmids, quantify the verified and correct target plasmids with a UV spectrophotometer, and use 1× TE (pH8.0) buffer diluted to 10 10 copies / μl as a stock solution, and stored at –20°C for future use.
[0115] 2. DNA template extraction
[0116] 2.1 Sputum: Add 4 times the volume of normal saline to the sputum, pipette it repeatedly with a 1ml pipette tip, and place it in a refrigerator at 4°C overnight to fully liquefy t...
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